Gene annotation
Transcriptome id Sobic.003G218700.1,Sobic.003G218700.3,Sobic.003G218700.2
Synonym Sb03g027740, LOL2
Functional annotation LSD1 zinc finger domain containing protein, expressed
UniProt A0A1W0VYF5 , A0A1B6Q4N0 , A0A1B6Q4N4
Pfam PF06943
Panther DB PTHR31747 PTHR31747:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21610 : lsd one like 2
RAP-DB (Rice) LOC_Os01g42710.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a028706
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G218700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
2 Sobic.005G111000 receptor protein kinase TMK1 precursor, putative, expressed -
3 Sobic.006G280100 SET domain containing protein, expressed -
4 Sobic.002G234600 ZOS9-15 - C2H2 zinc finger protein, expressed -
5 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
6 Sobic.010G262100 expressed protein -
7 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
8 Sobic.008G088842 - -
9 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
10 Sobic.004G111000 bromodomain containing protein, expressed -
11 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
12 Sobic.003G045200 expressed protein K18404: tudor domain-containing protein 3
13 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
14 Sobic.008G080500 expressed protein -
15 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
16 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
17 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
18 Sobic.006G112700 ATPOT1, putative, expressed -
19 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
20 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -


Gene co-expression network
sample Sobic003G218700 Sobic003G218700 Sobic002G079100 Sobic002G079100 Sobic003G218700--Sobic002G079100 Sobic005G111000 Sobic005G111000 Sobic003G218700--Sobic005G111000 Sobic006G280100 Sobic006G280100 Sobic003G218700--Sobic006G280100 Sobic002G234600 Sobic002G234600 Sobic003G218700--Sobic002G234600 Sobic008G017100 Sobic008G017100 Sobic003G218700--Sobic008G017100 Sobic010G262100 Sobic010G262100 Sobic003G218700--Sobic010G262100 Sobic010G138900 Sobic010G138900 Sobic003G218700--Sobic010G138900 Sobic008G088842 Sobic008G088842 Sobic003G218700--Sobic008G088842 Sobic001G134300 Sobic001G134300 Sobic003G218700--Sobic001G134300 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic002G079100--Sobic008G017100 Sobic008G080500 Sobic008G080500 Sobic002G079100--Sobic008G080500 Sobic002G380100 Sobic002G380100 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic005G111000--Sobic003G218700 Sobic005G111000--Sobic006G280100 Sobic007G059600 Sobic007G059600 Sobic005G111000--Sobic007G059600 Sobic005G111000--Sobic008G088842 Sobic005G111000--Sobic002G079100 Sobic002G425200 Sobic002G425200 Sobic005G111000--Sobic002G425200 Sobic003G104100 Sobic003G104100 Sobic005G111000--Sobic003G104100 Sobic009G190200 Sobic009G190200 Sobic005G111000--Sobic009G190200 Sobic009G101000 Sobic009G101000 Sobic005G111000--Sobic009G101000 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic007G125700 Sobic007G125700 Sobic006G280100--Sobic007G125700 Sobic006G280100--Sobic002G079100 Sobic006G280100--Sobic008G080500 Sobic002G234600--Sobic001G134300 Sobic009G129600 Sobic009G129600 Sobic002G234600--Sobic009G129600 Sobic010G077500 Sobic010G077500 Sobic002G234600--Sobic010G077500 Sobic002G063900 Sobic002G063900 Sobic002G234600--Sobic002G063900 Sobic004G156500 Sobic004G156500 Sobic002G234600--Sobic004G156500 Sobic004G285000 Sobic004G285000 Sobic002G234600--Sobic004G285000 Sobic007G044100 Sobic007G044100 Sobic002G234600--Sobic007G044100 Sobic005G200800 Sobic005G200800 Sobic002G234600--Sobic005G200800 Sobic008G058800 Sobic008G058800 Sobic002G234600--Sobic008G058800 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic006G269800 Sobic006G269800 Sobic008G017100--Sobic006G269800 Sobic010G224700 Sobic010G224700 Sobic008G017100--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic008G017100--Sobic006G185200 Sobic008G017100--Sobic002G079100 Sobic002G378100 Sobic002G378100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G147200 Sobic008G147200 Sobic008G017100--Sobic008G147200 Sobic001G451300 Sobic001G451300 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic010G262100--Sobic001G248100 Sobic010G262100--Sobic008G080500 Sobic002G043100 Sobic002G043100 Sobic010G262100--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic010G262100--Sobic002G399800 Sobic002G371600 Sobic002G371600 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800 Sobic010G138900--Sobic008G088842 Sobic010G138900--Sobic010G262100 Sobic010G138900--Sobic001G451300 Sobic009G142000 Sobic009G142000 Sobic010G138900--Sobic009G142000 Sobic001G453000 Sobic001G453000 Sobic010G138900--Sobic001G453000 Sobic003G435500 Sobic003G435500 Sobic010G138900--Sobic003G435500 Sobic003G250900 Sobic003G250900 Sobic010G138900--Sobic003G250900 Sobic004G034700 Sobic004G034700 Sobic010G138900--Sobic004G034700 Sobic010G138900--Sobic002G043100 Sobic008G088842--Sobic010G138900 Sobic006G140600 Sobic006G140600 Sobic008G088842--Sobic006G140600 Sobic002G143200 Sobic002G143200 Sobic008G088842--Sobic002G143200 Sobic008G088842--Sobic010G262100 Sobic003G311600 Sobic003G311600 Sobic008G088842--Sobic003G311600 Sobic008G088842--Sobic001G451300 Sobic008G088842--Sobic006G280100 Sobic006G208400 Sobic006G208400 Sobic008G088842--Sobic006G208400 Sobic002G340200 Sobic002G340200 Sobic008G088842--Sobic002G340200 Sobic010G065300 Sobic010G065300 Sobic001G134300--Sobic010G065300 Sobic001G306900 Sobic001G306900 Sobic001G134300--Sobic001G306900 Sobic010G001100 Sobic010G001100 Sobic001G134300--Sobic010G001100 Sobic001G134300--Sobic004G156500 Sobic004G086200 Sobic004G086200 Sobic001G134300--Sobic004G086200 Sobic001G398800 Sobic001G398800 Sobic001G134300--Sobic001G398800 Sobic001G090800 Sobic001G090800 Sobic001G134300--Sobic001G090800 Sobic001G346900 Sobic001G346900 Sobic001G134300--Sobic001G346900 Sobic002G153700 Sobic002G153700 Sobic001G134300--Sobic002G153700
Octagon: transcription factors


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