Gene annotation
Transcriptome id Sobic.002G235600.1
Synonym LPA66, Sb02g027420
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QD37
Pfam PF13041 PF14432
Panther DB PTHR24015 PTHR24015:SF445
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48910 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g34700.1 : expressed protein
MaizeGDB (Corn) Zm00025a047357
Brachypodium KQJ90627
Barley HORVU5Hr1G070510.27 , HORVU5Hr1G070510.29 , HORVU5Hr1G070510.28 , HORVU5Hr1G070510.32 , HORVU5Hr1G070510.33 , HORVU5Hr1G070510.30 , HORVU5Hr1G070510.31
Wheat TraesCS5D02G258200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G158400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@recA protein, putative, expressed K03553: recombination protein RecA
2 Sobic.002G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.002G111800 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
4 Sobic.003G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
5 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
6 Sobic.001G228300 SAP domain containing protein, expressed -
7 Sobic.006G114300 pentatricopeptide, putative, expressed -
8 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.002G201100 ZF-HD protein dimerisation region containing protein, expressed -
10 Sobic.004G253800 - -
11 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
12 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
13 Sobic.005G141000 plant protein of unknown function domain containing protein, expressed -
14 Sobic.002G065400 OsSub3 - Putative Subtilisin homologue, expressed -
15 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
16 Sobic.010G202700 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
17 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
18 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
19 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
20 Sobic.005G020200 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic002G235600 Sobic002G235600 Sobic001G158400 Sobic001G158400 Sobic002G235600--Sobic001G158400 Sobic002G360200 Sobic002G360200 Sobic002G235600--Sobic002G360200 Sobic002G111800 Sobic002G111800 Sobic002G235600--Sobic002G111800 Sobic003G136400 Sobic003G136400 Sobic002G235600--Sobic003G136400 Sobic001G013900 Sobic001G013900 Sobic002G235600--Sobic001G013900 Sobic001G228300 Sobic001G228300 Sobic002G235600--Sobic001G228300 Sobic006G114300 Sobic006G114300 Sobic002G235600--Sobic006G114300 Sobic001G188600 Sobic001G188600 Sobic002G235600--Sobic001G188600 Sobic002G201100 Sobic002G201100 Sobic002G235600--Sobic002G201100 Sobic001G158400--Sobic002G235600 Sobic010G099300 Sobic010G099300 Sobic001G158400--Sobic010G099300 Sobic005G022000 Sobic005G022000 Sobic001G158400--Sobic005G022000 Sobic001G158400--Sobic003G136400 Sobic003G051500 Sobic003G051500 Sobic001G158400--Sobic003G051500 Sobic003G237100 Sobic003G237100 Sobic001G158400--Sobic003G237100 Sobic001G390900 Sobic001G390900 Sobic001G158400--Sobic001G390900 Sobic001G441200 Sobic001G441200 Sobic001G158400--Sobic001G441200 Sobic004G217900 Sobic004G217900 Sobic001G158400--Sobic004G217900 Sobic001G172300 Sobic001G172300 Sobic002G360200--Sobic001G172300 Sobic010G012900 Sobic010G012900 Sobic002G360200--Sobic010G012900 Sobic002G360200--Sobic001G013900 Sobic004G253800 Sobic004G253800 Sobic002G360200--Sobic004G253800 Sobic002G360200--Sobic001G188600 Sobic010G011200 Sobic010G011200 Sobic002G360200--Sobic010G011200 Sobic002G360200--Sobic006G114300 Sobic002G078000 Sobic002G078000 Sobic002G360200--Sobic002G078000 Sobic001G357200 Sobic001G357200 Sobic002G360200--Sobic001G357200 Sobic002G111800--Sobic002G235600 Sobic003G399100 Sobic003G399100 Sobic002G111800--Sobic003G399100 Sobic001G027100 Sobic001G027100 Sobic002G111800--Sobic001G027100 Sobic009G251000 Sobic009G251000 Sobic002G111800--Sobic009G251000 Sobic008G038600 Sobic008G038600 Sobic002G111800--Sobic008G038600 Sobic001G025800 Sobic001G025800 Sobic002G111800--Sobic001G025800 Sobic007G026200 Sobic007G026200 Sobic002G111800--Sobic007G026200 Sobic003G182100 Sobic003G182100 Sobic002G111800--Sobic003G182100 Sobic002G189600 Sobic002G189600 Sobic002G111800--Sobic002G189600 Sobic003G136400--Sobic001G188600 Sobic001G215300 Sobic001G215300 Sobic003G136400--Sobic001G215300 Sobic003G136400--Sobic001G357200 Sobic003G136400--Sobic006G114300 Sobic003G136400--Sobic001G172300 Sobic003G136400--Sobic002G078000 Sobic001G395300 Sobic001G395300 Sobic003G136400--Sobic001G395300 Sobic006G249100 Sobic006G249100 Sobic003G136400--Sobic006G249100 Sobic002G190800 Sobic002G190800 Sobic003G136400--Sobic002G190800 Sobic001G013900--Sobic002G360200 Sobic001G013900--Sobic002G078000 Sobic003G333700 Sobic003G333700 Sobic001G013900--Sobic003G333700 Sobic002G272400 Sobic002G272400 Sobic001G013900--Sobic002G272400 Sobic001G104300 Sobic001G104300 Sobic001G013900--Sobic001G104300 Sobic001G013900--Sobic001G188600 Sobic001G013900--Sobic001G172300 Sobic004G338300 Sobic004G338300 Sobic001G013900--Sobic004G338300 Sobic008G058000 Sobic008G058000 Sobic001G013900--Sobic008G058000 Sobic001G228300--Sobic001G395300 Sobic002G045700 Sobic002G045700 Sobic001G228300--Sobic002G045700 Sobic001G138000 Sobic001G138000 Sobic001G228300--Sobic001G138000 Sobic006G263800 Sobic006G263800 Sobic001G228300--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G228300--Sobic003G392000 Sobic007G116100 Sobic007G116100 Sobic001G228300--Sobic007G116100 Sobic002G140000 Sobic002G140000 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic006G110200 Sobic006G110200 Sobic001G228300--Sobic006G110200 Sobic006G114300--Sobic001G188600 Sobic006G114300--Sobic001G357200 Sobic004G109000 Sobic004G109000 Sobic006G114300--Sobic004G109000 Sobic001G069500 Sobic001G069500 Sobic006G114300--Sobic001G069500 Sobic006G114300--Sobic010G012900 Sobic003G383500 Sobic003G383500 Sobic006G114300--Sobic003G383500 Sobic006G114300--Sobic004G253800 Sobic007G211100 Sobic007G211100 Sobic006G114300--Sobic007G211100 Sobic007G013400 Sobic007G013400 Sobic006G114300--Sobic007G013400 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G188600--Sobic001G357200 Sobic009G098100 Sobic009G098100 Sobic001G188600--Sobic009G098100 Sobic001G188600--Sobic010G012900 Sobic001G188600--Sobic004G109000 Sobic001G188600--Sobic007G211100 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic003G333000 Sobic003G333000 Sobic002G201100--Sobic003G333000 Sobic009G196200 Sobic009G196200 Sobic002G201100--Sobic009G196200 Sobic006G001400 Sobic006G001400 Sobic002G201100--Sobic006G001400 Sobic009G055900 Sobic009G055900 Sobic002G201100--Sobic009G055900 Sobic010G107200 Sobic010G107200 Sobic002G201100--Sobic010G107200 Sobic005G227050 Sobic005G227050 Sobic002G201100--Sobic005G227050 Sobic005G196500 Sobic005G196500 Sobic002G201100--Sobic005G196500 Sobic009G154100 Sobic009G154100 Sobic002G201100--Sobic009G154100 Sobic005G020200 Sobic005G020200 Sobic002G201100--Sobic005G020200
Octagon: transcription factors


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