Gene annotation
Transcriptome id Sobic.005G078200.1
Synonym Sb05g006390
Functional annotation OsFBX400 - F-box domain containing protein, expressed
UniProt A0A1Z5RHB1 , C6JS36
Pfam -
Panther DB PTHR32212 PTHR32212:SF90
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56370 : F-box/RNI-like/FBD-like domains-containing protein
RAP-DB (Rice) LOC_Os11g09474.1 : OsFBX400 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ89023 , PNT63968
Barley -
Wheat TraesCS6D02G067100 , TraesCS6B02G093600 , TraesCS6B02G093600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
2 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
3 Sobic.002G272400 expressed protein -
4 Sobic.003G311600 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
5 Sobic.007G094500 KH domain containing protein, putative, expressed -
6 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.001G453500 expressed protein -
8 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
9 Sobic.006G262100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
10 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
11 Sobic.010G224700 - K17680: twinkle protein
12 Sobic.001G395200 cyclin-related protein, putative, expressed -
13 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
14 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
15 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
16 Sobic.004G342300 expressed protein -
17 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
18 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
19 Sobic.001G315400 expressed protein -
20 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -


Gene co-expression network
sample Sobic005G078200 Sobic005G078200 Sobic008G101900 Sobic008G101900 Sobic005G078200--Sobic008G101900 Sobic009G066400 Sobic009G066400 Sobic005G078200--Sobic009G066400 Sobic002G272400 Sobic002G272400 Sobic005G078200--Sobic002G272400 Sobic003G311600 Sobic003G311600 Sobic005G078200--Sobic003G311600 Sobic007G094500 Sobic007G094500 Sobic005G078200--Sobic007G094500 Sobic010G032300 Sobic010G032300 Sobic005G078200--Sobic010G032300 Sobic001G453500 Sobic001G453500 Sobic005G078200--Sobic001G453500 Sobic009G148200 Sobic009G148200 Sobic005G078200--Sobic009G148200 Sobic006G262100 Sobic006G262100 Sobic005G078200--Sobic006G262100 Sobic006G274100 Sobic006G274100 Sobic008G101900--Sobic006G274100 Sobic008G058000 Sobic008G058000 Sobic008G101900--Sobic008G058000 Sobic003G223000 Sobic003G223000 Sobic008G101900--Sobic003G223000 Sobic006G193500 Sobic006G193500 Sobic008G101900--Sobic006G193500 Sobic001G371700 Sobic001G371700 Sobic008G101900--Sobic001G371700 Sobic001G395200 Sobic001G395200 Sobic008G101900--Sobic001G395200 Sobic001G199500 Sobic001G199500 Sobic008G101900--Sobic001G199500 Sobic008G101900--Sobic002G272400 Sobic004G354000 Sobic004G354000 Sobic008G101900--Sobic004G354000 Sobic007G014800 Sobic007G014800 Sobic009G066400--Sobic007G014800 Sobic009G142000 Sobic009G142000 Sobic009G066400--Sobic009G142000 Sobic005G143300 Sobic005G143300 Sobic009G066400--Sobic005G143300 Sobic009G066400--Sobic009G148200 Sobic001G367100 Sobic001G367100 Sobic009G066400--Sobic001G367100 Sobic009G066400--Sobic001G453500 Sobic009G066400--Sobic006G274100 Sobic001G245900 Sobic001G245900 Sobic009G066400--Sobic001G245900 Sobic010G224700 Sobic010G224700 Sobic009G066400--Sobic010G224700 Sobic002G141900 Sobic002G141900 Sobic002G272400--Sobic002G141900 Sobic001G013900 Sobic001G013900 Sobic002G272400--Sobic001G013900 Sobic002G272400--Sobic008G101900 Sobic002G272400--Sobic003G223000 Sobic002G272400--Sobic008G058000 Sobic002G272400--Sobic001G371700 Sobic004G119400 Sobic004G119400 Sobic002G272400--Sobic004G119400 Sobic001G315400 Sobic001G315400 Sobic002G272400--Sobic001G315400 Sobic010G157700 Sobic010G157700 Sobic002G272400--Sobic010G157700 Sobic007G070000 Sobic007G070000 Sobic003G311600--Sobic007G070000 Sobic008G088842 Sobic008G088842 Sobic003G311600--Sobic008G088842 Sobic003G104100 Sobic003G104100 Sobic003G311600--Sobic003G104100 Sobic001G165801 Sobic001G165801 Sobic003G311600--Sobic001G165801 Sobic006G236000 Sobic006G236000 Sobic003G311600--Sobic006G236000 Sobic002G340200 Sobic002G340200 Sobic003G311600--Sobic002G340200 Sobic003G311600--Sobic007G094500 Sobic003G135500 Sobic003G135500 Sobic003G311600--Sobic003G135500 Sobic002G162500 Sobic002G162500 Sobic003G311600--Sobic002G162500 Sobic007G094500--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic007G094500--Sobic008G017100 Sobic007G094500--Sobic004G354000 Sobic002G380100 Sobic002G380100 Sobic007G094500--Sobic002G380100 Sobic002G079100 Sobic002G079100 Sobic007G094500--Sobic002G079100 Sobic007G094500--Sobic010G224700 Sobic006G245900 Sobic006G245900 Sobic007G094500--Sobic006G245900 Sobic002G431400 Sobic002G431400 Sobic007G094500--Sobic002G431400 Sobic002G048700 Sobic002G048700 Sobic007G094500--Sobic002G048700 Sobic004G342300 Sobic004G342300 Sobic010G032300--Sobic004G342300 Sobic006G140400 Sobic006G140400 Sobic010G032300--Sobic006G140400 Sobic010G032300--Sobic006G274100 Sobic010G032300--Sobic010G224700 Sobic006G059500 Sobic006G059500 Sobic010G032300--Sobic006G059500 Sobic002G132600 Sobic002G132600 Sobic010G032300--Sobic002G132600 Sobic009G211200 Sobic009G211200 Sobic010G032300--Sobic009G211200 Sobic003G259600 Sobic003G259600 Sobic010G032300--Sobic003G259600 Sobic005G028300 Sobic005G028300 Sobic010G032300--Sobic005G028300 Sobic006G111200 Sobic006G111200 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic004G151000 Sobic004G151000 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic004G027300 Sobic004G027300 Sobic001G453500--Sobic004G027300 Sobic001G049800 Sobic001G049800 Sobic001G453500--Sobic001G049800 Sobic002G112600 Sobic002G112600 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic006G067700 Sobic006G067700 Sobic009G148200--Sobic006G067700 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic004G199200 Sobic004G199200 Sobic009G148200--Sobic004G199200 Sobic010G277200 Sobic010G277200 Sobic009G148200--Sobic010G277200 Sobic009G148200--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic009G148200--Sobic002G216600 Sobic009G148200--Sobic009G066400 Sobic009G148200--Sobic001G368300 Sobic004G144100 Sobic004G144100 Sobic006G262100--Sobic004G144100 Sobic006G262100--Sobic006G067700 Sobic001G494100 Sobic001G494100 Sobic006G262100--Sobic001G494100 Sobic002G162000 Sobic002G162000 Sobic006G262100--Sobic002G162000 Sobic002G098500 Sobic002G098500 Sobic006G262100--Sobic002G098500 Sobic006G262100--Sobic002G216600 Sobic006G257200 Sobic006G257200 Sobic006G262100--Sobic006G257200 Sobic006G262100--Sobic001G395200 Sobic002G143200 Sobic002G143200 Sobic006G262100--Sobic002G143200
Octagon: transcription factors


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