Gene annotation
Transcriptome id Sobic.006G146900.1
Synonym Sb06g022570
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1B6PM19
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23330 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g39090.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a010695
Brachypodium KQK15114
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G120200 pentatricopeptide, putative, expressed -
2 Sobic.002G200500 pentatricopeptide, putative, expressed -
3 Sobic.002G237700 expressed protein -
4 Sobic.006G240300 expressed protein K10882: EME1, crossover junction endonuclease EME1
5 Sobic.003G182100 tRNA methyltransferase, putative, expressed K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase
6 Sobic.001G404000 glucan endo-1,3-beta-glucosidase 9 precursor, putative, expressed -
7 Sobic.001G362400 PPR repeat containing protein, expressed -
8 Sobic.001G193900 - -
9 Sobic.009G233600 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
10 Sobic.005G111600 CRP7 - Cysteine-rich family protein precursor, expressed -
11 Sobic.002G181200 expressed protein -
12 Sobic.003G010500 protein kinase domain containing protein, expressed -
13 Sobic.001G374800 auxin response factor 75, putative, expressed K10994: cell cycle checkpoint control protein RAD9A
14 Sobic.005G114600 tyrosine aminotransferase, putative, expressed K03263: translation initiation factor 5A
15 Sobic.001G059900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
16 Sobic.003G273800 IQ calmodulin-binding motif domain containing protein, expressed -
17 Sobic.004G269900 "GS2/GL2(Ortholog in rice:Che et al., 2015(PubMedID : 31659888)@growth-regulating factor, putative, expressed -
18 Sobic.002G022600 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
19 Sobic.001G135300 expressed protein -
20 Sobic.005G111000 receptor protein kinase TMK1 precursor, putative, expressed -


Gene co-expression network
sample Sobic006G146900 Sobic006G146900 Sobic002G120200 Sobic002G120200 Sobic006G146900--Sobic002G120200 Sobic002G200500 Sobic002G200500 Sobic006G146900--Sobic002G200500 Sobic002G237700 Sobic002G237700 Sobic006G146900--Sobic002G237700 Sobic006G240300 Sobic006G240300 Sobic006G146900--Sobic006G240300 Sobic003G182100 Sobic003G182100 Sobic006G146900--Sobic003G182100 Sobic001G404000 Sobic001G404000 Sobic006G146900--Sobic001G404000 Sobic001G362400 Sobic001G362400 Sobic006G146900--Sobic001G362400 Sobic001G193900 Sobic001G193900 Sobic006G146900--Sobic001G193900 Sobic009G233600 Sobic009G233600 Sobic006G146900--Sobic009G233600 Sobic002G120200--Sobic006G146900 Sobic002G034400 Sobic002G034400 Sobic002G120200--Sobic002G034400 Sobic006G260600 Sobic006G260600 Sobic002G120200--Sobic006G260600 Sobic001G451200 Sobic001G451200 Sobic002G120200--Sobic001G451200 Sobic002G120200--Sobic002G200500 Sobic004G356600 Sobic004G356600 Sobic002G120200--Sobic004G356600 Sobic002G120200--Sobic009G233600 Sobic006G073150 Sobic006G073150 Sobic002G120200--Sobic006G073150 Sobic006G271100 Sobic006G271100 Sobic002G120200--Sobic006G271100 Sobic002G200500--Sobic006G146900 Sobic002G200500--Sobic002G120200 Sobic002G200500--Sobic001G362400 Sobic003G222400 Sobic003G222400 Sobic002G200500--Sobic003G222400 Sobic002G200500--Sobic006G240300 Sobic004G339000 Sobic004G339000 Sobic002G200500--Sobic004G339000 Sobic010G018800 Sobic010G018800 Sobic002G200500--Sobic010G018800 Sobic010G256433 Sobic010G256433 Sobic002G200500--Sobic010G256433 Sobic002G200500--Sobic002G034400 Sobic003G273800 Sobic003G273800 Sobic002G237700--Sobic003G273800 Sobic002G237700--Sobic009G233600 Sobic006G069500 Sobic006G069500 Sobic002G237700--Sobic006G069500 Sobic001G511200 Sobic001G511200 Sobic002G237700--Sobic001G511200 Sobic002G237700--Sobic006G240300 Sobic005G188400 Sobic005G188400 Sobic002G237700--Sobic005G188400 Sobic002G356700 Sobic002G356700 Sobic002G237700--Sobic002G356700 Sobic004G180400 Sobic004G180400 Sobic002G237700--Sobic004G180400 Sobic009G229100 Sobic009G229100 Sobic002G237700--Sobic009G229100 Sobic006G240300--Sobic002G237700 Sobic010G260800 Sobic010G260800 Sobic006G240300--Sobic010G260800 Sobic006G240300--Sobic003G273800 Sobic006G179200 Sobic006G179200 Sobic006G240300--Sobic006G179200 Sobic006G240300--Sobic006G146900 Sobic002G362600 Sobic002G362600 Sobic006G240300--Sobic002G362600 Sobic005G210600 Sobic005G210600 Sobic006G240300--Sobic005G210600 Sobic003G315700 Sobic003G315700 Sobic006G240300--Sobic003G315700 Sobic007G153400 Sobic007G153400 Sobic006G240300--Sobic007G153400 Sobic002G111800 Sobic002G111800 Sobic003G182100--Sobic002G111800 Sobic010G099300 Sobic010G099300 Sobic003G182100--Sobic010G099300 Sobic003G273300 Sobic003G273300 Sobic003G182100--Sobic003G273300 Sobic007G182600 Sobic007G182600 Sobic003G182100--Sobic007G182600 Sobic008G101900 Sobic008G101900 Sobic003G182100--Sobic008G101900 Sobic004G354000 Sobic004G354000 Sobic003G182100--Sobic004G354000 Sobic003G182100--Sobic006G146900 Sobic001G436600 Sobic001G436600 Sobic003G182100--Sobic001G436600 Sobic001G013900 Sobic001G013900 Sobic003G182100--Sobic001G013900 Sobic002G022600 Sobic002G022600 Sobic001G404000--Sobic002G022600 Sobic001G059900 Sobic001G059900 Sobic001G404000--Sobic001G059900 Sobic004G269900 Sobic004G269900 Sobic001G404000--Sobic004G269900 Sobic006G098400 Sobic006G098400 Sobic001G404000--Sobic006G098400 Sobic001G404000--Sobic002G237700 Sobic003G231900 Sobic003G231900 Sobic001G404000--Sobic003G231900 Sobic001G404000--Sobic009G233600 Sobic005G111600 Sobic005G111600 Sobic001G404000--Sobic005G111600 Sobic001G404000--Sobic006G146900 Sobic001G362400--Sobic002G034400 Sobic001G362400--Sobic002G120200 Sobic007G043200 Sobic007G043200 Sobic001G362400--Sobic007G043200 Sobic001G362400--Sobic003G222400 Sobic001G419900 Sobic001G419900 Sobic001G362400--Sobic001G419900 Sobic001G134600 Sobic001G134600 Sobic001G362400--Sobic001G134600 Sobic001G362400--Sobic002G200500 Sobic001G362400--Sobic004G356600 Sobic001G362400--Sobic006G146900 Sobic001G193900--Sobic001G059900 Sobic002G297000 Sobic002G297000 Sobic001G193900--Sobic002G297000 Sobic001G193900--Sobic004G269900 Sobic001G193900--Sobic002G022600 Sobic001G193900--Sobic006G098400 Sobic001G193900--Sobic006G146900 Sobic003G037200 Sobic003G037200 Sobic001G193900--Sobic003G037200 Sobic002G219500 Sobic002G219500 Sobic001G193900--Sobic002G219500 Sobic001G193900--Sobic002G120200 Sobic009G233600--Sobic002G356700 Sobic009G233600--Sobic009G229100 Sobic003G364700 Sobic003G364700 Sobic009G233600--Sobic003G364700 Sobic009G233600--Sobic001G511200 Sobic009G233600--Sobic004G356600 Sobic005G022400 Sobic005G022400 Sobic009G233600--Sobic005G022400 Sobic010G145200 Sobic010G145200 Sobic009G233600--Sobic010G145200 Sobic003G178200 Sobic003G178200 Sobic009G233600--Sobic003G178200 Sobic009G233600--Sobic002G237700
Octagon: transcription factors


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