Gene annotation
Transcriptome id Sobic.001G374800.1
Synonym Sb01g035590, ATRAD9, RAD9
Functional annotation auxin response factor 75, putative, expressed
UniProt C5X0M5
Pfam PF04139
Panther DB PTHR15237 PTHR15237:SF0
NCBI CDD KOG2810; Checkpoint 9-1-1 complex, RAD9 component
KEGG Orthology K10994; cell cycle checkpoint control protein RAD9A
Gene Ontology GO:0000077; DNA damage checkpoint GO:0006281DNA repair GO:0000075cell cycle checkpoint


Orthologs (automatic annotation)
TAIR AT3G05480 : cell cycle checkpoint control protein family
RAP-DB (Rice) LOC_Os03g22450.1 : auxin response factor 75, putative, expressed
MaizeGDB (Corn) Zm00025a002412
Brachypodium KQK21728
Barley HORVU4Hr1G046540.1 , HORVU4Hr1G046540.3 , HORVU4Hr1G046540.2 , HORVU4Hr1G046540.5 , HORVU4Hr1G046540.4 , HORVU4Hr1G046540.7 , HORVU4Hr1G046540.6 , HORVU4Hr1G046540.9 , HORVU4Hr1G046540.8 , HORVU4Hr1G046540.15 , HORVU4Hr1G046540.14 , HORVU4Hr1G046540.17 , HORVU4Hr1G046540.16 , HORVU4Hr1G046540.11 , HORVU4Hr1G046540.10 , HORVU4Hr1G046540.13 , HORVU4Hr1G046540.12
Wheat TraesCS4A02G139500 , TraesCS4D02G167700 , TraesCS4B02G154600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G081700 SWIB/MDM2 domain containing protein, expressed -
2 Sobic.003G231900 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
3 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
4 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.005G114600 tyrosine aminotransferase, putative, expressed K03263: translation initiation factor 5A
6 Sobic.003G257200 expressed protein -
7 Sobic.004G208100 expressed protein -
8 Sobic.004G117300 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
9 Sobic.002G126200 expressed protein -
10 Sobic.006G240300 expressed protein K10882: EME1, crossover junction endonuclease EME1
11 Sobic.005G088900 AGAP007117-PA, putative, expressed -
12 Sobic.003G182100 tRNA methyltransferase, putative, expressed K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase
13 Sobic.002G120200 pentatricopeptide, putative, expressed -
14 Sobic.001G146900 expressed protein -
15 Sobic.003G222200 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.002G303800 expressed protein -
17 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
18 Sobic.001G135300 expressed protein -
19 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
20 Sobic.001G059900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -


Gene co-expression network
sample Sobic001G374800 Sobic001G374800 Sobic001G081700 Sobic001G081700 Sobic001G374800--Sobic001G081700 Sobic003G231900 Sobic003G231900 Sobic001G374800--Sobic003G231900 Sobic004G190600 Sobic004G190600 Sobic001G374800--Sobic004G190600 Sobic006G146900 Sobic006G146900 Sobic001G374800--Sobic006G146900 Sobic005G114600 Sobic005G114600 Sobic001G374800--Sobic005G114600 Sobic003G257200 Sobic003G257200 Sobic001G374800--Sobic003G257200 Sobic004G208100 Sobic004G208100 Sobic001G374800--Sobic004G208100 Sobic004G117300 Sobic004G117300 Sobic001G374800--Sobic004G117300 Sobic002G126200 Sobic002G126200 Sobic001G374800--Sobic002G126200 Sobic004G343700 Sobic004G343700 Sobic001G081700--Sobic004G343700 Sobic001G081700--Sobic004G190600 Sobic001G081700--Sobic001G374800 Sobic001G534300 Sobic001G534300 Sobic001G081700--Sobic001G534300 Sobic008G113300 Sobic008G113300 Sobic001G081700--Sobic008G113300 Sobic007G162400 Sobic007G162400 Sobic001G081700--Sobic007G162400 Sobic001G105800 Sobic001G105800 Sobic001G081700--Sobic001G105800 Sobic006G093200 Sobic006G093200 Sobic001G081700--Sobic006G093200 Sobic002G341700 Sobic002G341700 Sobic001G081700--Sobic002G341700 Sobic003G273800 Sobic003G273800 Sobic003G231900--Sobic003G273800 Sobic001G404000 Sobic001G404000 Sobic003G231900--Sobic001G404000 Sobic002G237700 Sobic002G237700 Sobic003G231900--Sobic002G237700 Sobic001G511200 Sobic001G511200 Sobic003G231900--Sobic001G511200 Sobic009G233600 Sobic009G233600 Sobic003G231900--Sobic009G233600 Sobic003G231900--Sobic001G374800 Sobic009G178900 Sobic009G178900 Sobic003G231900--Sobic009G178900 Sobic008G127200 Sobic008G127200 Sobic003G231900--Sobic008G127200 Sobic010G271000 Sobic010G271000 Sobic003G231900--Sobic010G271000 Sobic001G235700 Sobic001G235700 Sobic004G190600--Sobic001G235700 Sobic002G303800 Sobic002G303800 Sobic004G190600--Sobic002G303800 Sobic001G440900 Sobic001G440900 Sobic004G190600--Sobic001G440900 Sobic004G190600--Sobic004G208100 Sobic004G190600--Sobic001G081700 Sobic010G032700 Sobic010G032700 Sobic004G190600--Sobic010G032700 Sobic010G054600 Sobic010G054600 Sobic004G190600--Sobic010G054600 Sobic001G146900 Sobic001G146900 Sobic004G190600--Sobic001G146900 Sobic001G371100 Sobic001G371100 Sobic004G190600--Sobic001G371100 Sobic002G120200 Sobic002G120200 Sobic006G146900--Sobic002G120200 Sobic002G200500 Sobic002G200500 Sobic006G146900--Sobic002G200500 Sobic006G146900--Sobic002G237700 Sobic006G240300 Sobic006G240300 Sobic006G146900--Sobic006G240300 Sobic003G182100 Sobic003G182100 Sobic006G146900--Sobic003G182100 Sobic006G146900--Sobic001G404000 Sobic001G362400 Sobic001G362400 Sobic006G146900--Sobic001G362400 Sobic001G193900 Sobic001G193900 Sobic006G146900--Sobic001G193900 Sobic006G146900--Sobic009G233600 Sobic003G328400 Sobic003G328400 Sobic005G114600--Sobic003G328400 Sobic006G073150 Sobic006G073150 Sobic005G114600--Sobic006G073150 Sobic002G416200 Sobic002G416200 Sobic005G114600--Sobic002G416200 Sobic005G114600--Sobic006G146900 Sobic005G114600--Sobic001G374800 Sobic006G066000 Sobic006G066000 Sobic005G114600--Sobic006G066000 Sobic005G112632 Sobic005G112632 Sobic005G114600--Sobic005G112632 Sobic005G114600--Sobic003G257200 Sobic008G090300 Sobic008G090300 Sobic005G114600--Sobic008G090300 Sobic003G098200 Sobic003G098200 Sobic003G257200--Sobic003G098200 Sobic009G088600 Sobic009G088600 Sobic003G257200--Sobic009G088600 Sobic001G097400 Sobic001G097400 Sobic003G257200--Sobic001G097400 Sobic006G127500 Sobic006G127500 Sobic003G257200--Sobic006G127500 Sobic002G267600 Sobic002G267600 Sobic003G257200--Sobic002G267600 Sobic004G343600 Sobic004G343600 Sobic003G257200--Sobic004G343600 Sobic010G092801 Sobic010G092801 Sobic003G257200--Sobic010G092801 Sobic002G183300 Sobic002G183300 Sobic003G257200--Sobic002G183300 Sobic009G253400 Sobic009G253400 Sobic003G257200--Sobic009G253400 Sobic010G021900 Sobic010G021900 Sobic004G208100--Sobic010G021900 Sobic003G444300 Sobic003G444300 Sobic004G208100--Sobic003G444300 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic002G133000 Sobic002G133000 Sobic004G208100--Sobic002G133000 Sobic001G169800 Sobic001G169800 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic006G134200 Sobic006G134200 Sobic004G117300--Sobic006G134200 Sobic008G129200 Sobic008G129200 Sobic004G117300--Sobic008G129200 Sobic001G175000 Sobic001G175000 Sobic004G117300--Sobic001G175000 Sobic003G041700 Sobic003G041700 Sobic004G117300--Sobic003G041700 Sobic002G279600 Sobic002G279600 Sobic004G117300--Sobic002G279600 Sobic001G075400 Sobic001G075400 Sobic004G117300--Sobic001G075400 Sobic007G207700 Sobic007G207700 Sobic004G117300--Sobic007G207700 Sobic008G113800 Sobic008G113800 Sobic004G117300--Sobic008G113800 Sobic009G194900 Sobic009G194900 Sobic004G117300--Sobic009G194900 Sobic006G016600 Sobic006G016600 Sobic002G126200--Sobic006G016600 Sobic002G126200--Sobic001G374800 Sobic004G080400 Sobic004G080400 Sobic002G126200--Sobic004G080400 Sobic001G448200 Sobic001G448200 Sobic002G126200--Sobic001G448200 Sobic002G384200 Sobic002G384200 Sobic002G126200--Sobic002G384200 Sobic002G005700 Sobic002G005700 Sobic002G126200--Sobic002G005700 Sobic003G030000 Sobic003G030000 Sobic002G126200--Sobic003G030000 Sobic002G126200--Sobic003G257200 Sobic002G123900 Sobic002G123900 Sobic002G126200--Sobic002G123900
Octagon: transcription factors


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