Gene annotation
Transcriptome id Sobic.003G231900.1
Synonym Sb03g028970
Functional annotation mitotic checkpoint protein, putative, expressed
UniProt C5XEI1
Pfam PF00400
Panther DB PTHR10971 PTHR10971:SF16
NCBI CDD -
KEGG Orthology K14298; RAE1, mRNA export factor
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G80670 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g44394.1 : mitotic checkpoint protein, putative, expressed
MaizeGDB (Corn) Zm00025a028305
Brachypodium KQK08888
Barley HORVU3Hr1G056400.21 , HORVU3Hr1G056400.20 , HORVU3Hr1G056400.23 , HORVU3Hr1G056400.22 , HORVU3Hr1G056400.24 , HORVU3Hr1G056400.27 , HORVU3Hr1G056400.29 , HORVU3Hr1G056400.28 , HORVU3Hr1G056400.30 , HORVU3Hr1G056400.25 , HORVU3Hr1G056400.26 , HORVU3Hr1G056400.6 , HORVU3Hr1G056400.7 , HORVU3Hr1G056400.4 , HORVU3Hr1G056400.5 , HORVU3Hr1G056400.2 , HORVU3Hr1G056400.3 , HORVU3Hr1G056400.1 , HORVU3Hr1G056400.8 , HORVU3Hr1G056400.9 , HORVU3Hr1G056400.18 , HORVU3Hr1G056400.19 , HORVU3Hr1G056400.14 , HORVU3Hr1G056400.15 , HORVU3Hr1G056400.16 , HORVU3Hr1G056400.17 , HORVU3Hr1G056400.10 , HORVU3Hr1G056400.11 , HORVU3Hr1G056400.12 , HORVU3Hr1G056400.13
Wheat TraesCS3B02G258300 , TraesCS3D02G224200 , TraesCS3A02G226200
Populus -


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cDNA sequences
Sobic.003G231900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G273800 IQ calmodulin-binding motif domain containing protein, expressed -
2 Sobic.001G404000 glucan endo-1,3-beta-glucosidase 9 precursor, putative, expressed -
3 Sobic.002G237700 expressed protein -
4 Sobic.001G511200 expressed protein -
5 Sobic.009G233600 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
6 Sobic.001G374800 auxin response factor 75, putative, expressed K10994: cell cycle checkpoint control protein RAD9A
7 Sobic.009G178900 histone H3, putative, expressed K11253: histone H3
8 Sobic.008G127200 expressed protein -
9 Sobic.010G271000 expansin precursor, putative, expressed -
10 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
11 Sobic.002G279600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G205200 PPR repeat containing protein, expressed -
13 Sobic.004G117300 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
14 Sobic.006G069500 glutaredoxin, putative, expressed -
15 Sobic.007G085350 - -
16 Sobic.002G052500 - -
17 Sobic.006G260600 OTU-like cysteine protease family protein, putative, expressed K13717: OTU domain-containing protein 3
18 Sobic.001G533200 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.010G088950 - -
20 Sobic.001G059900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -


Gene co-expression network
sample Sobic003G231900 Sobic003G231900 Sobic003G273800 Sobic003G273800 Sobic003G231900--Sobic003G273800 Sobic001G404000 Sobic001G404000 Sobic003G231900--Sobic001G404000 Sobic002G237700 Sobic002G237700 Sobic003G231900--Sobic002G237700 Sobic001G511200 Sobic001G511200 Sobic003G231900--Sobic001G511200 Sobic009G233600 Sobic009G233600 Sobic003G231900--Sobic009G233600 Sobic001G374800 Sobic001G374800 Sobic003G231900--Sobic001G374800 Sobic009G178900 Sobic009G178900 Sobic003G231900--Sobic009G178900 Sobic008G127200 Sobic008G127200 Sobic003G231900--Sobic008G127200 Sobic010G271000 Sobic010G271000 Sobic003G231900--Sobic010G271000 Sobic006G069500 Sobic006G069500 Sobic003G273800--Sobic006G069500 Sobic003G273800--Sobic002G237700 Sobic003G273800--Sobic001G511200 Sobic003G273800--Sobic009G178900 Sobic003G273800--Sobic009G233600 Sobic004G077100 Sobic004G077100 Sobic003G273800--Sobic004G077100 Sobic004G180400 Sobic004G180400 Sobic003G273800--Sobic004G180400 Sobic005G188400 Sobic005G188400 Sobic003G273800--Sobic005G188400 Sobic001G059900 Sobic001G059900 Sobic003G273800--Sobic001G059900 Sobic002G022600 Sobic002G022600 Sobic001G404000--Sobic002G022600 Sobic001G404000--Sobic001G059900 Sobic004G269900 Sobic004G269900 Sobic001G404000--Sobic004G269900 Sobic006G098400 Sobic006G098400 Sobic001G404000--Sobic006G098400 Sobic001G404000--Sobic002G237700 Sobic001G404000--Sobic003G231900 Sobic001G404000--Sobic009G233600 Sobic005G111600 Sobic005G111600 Sobic001G404000--Sobic005G111600 Sobic006G146900 Sobic006G146900 Sobic001G404000--Sobic006G146900 Sobic002G237700--Sobic003G273800 Sobic002G237700--Sobic009G233600 Sobic002G237700--Sobic006G069500 Sobic002G237700--Sobic001G511200 Sobic006G240300 Sobic006G240300 Sobic002G237700--Sobic006G240300 Sobic002G237700--Sobic005G188400 Sobic002G356700 Sobic002G356700 Sobic002G237700--Sobic002G356700 Sobic002G237700--Sobic004G180400 Sobic009G229100 Sobic009G229100 Sobic002G237700--Sobic009G229100 Sobic001G511200--Sobic006G069500 Sobic003G364700 Sobic003G364700 Sobic001G511200--Sobic003G364700 Sobic001G511200--Sobic009G229100 Sobic001G511200--Sobic003G273800 Sobic001G511200--Sobic009G178900 Sobic001G511200--Sobic002G356700 Sobic001G511200--Sobic009G233600 Sobic001G511200--Sobic008G127200 Sobic003G201300 Sobic003G201300 Sobic001G511200--Sobic003G201300 Sobic009G233600--Sobic002G356700 Sobic009G233600--Sobic009G229100 Sobic009G233600--Sobic003G364700 Sobic009G233600--Sobic001G511200 Sobic004G356600 Sobic004G356600 Sobic009G233600--Sobic004G356600 Sobic005G022400 Sobic005G022400 Sobic009G233600--Sobic005G022400 Sobic010G145200 Sobic010G145200 Sobic009G233600--Sobic010G145200 Sobic003G178200 Sobic003G178200 Sobic009G233600--Sobic003G178200 Sobic009G233600--Sobic002G237700 Sobic001G081700 Sobic001G081700 Sobic001G374800--Sobic001G081700 Sobic001G374800--Sobic003G231900 Sobic004G190600 Sobic004G190600 Sobic001G374800--Sobic004G190600 Sobic001G374800--Sobic006G146900 Sobic005G114600 Sobic005G114600 Sobic001G374800--Sobic005G114600 Sobic003G257200 Sobic003G257200 Sobic001G374800--Sobic003G257200 Sobic004G208100 Sobic004G208100 Sobic001G374800--Sobic004G208100 Sobic004G117300 Sobic004G117300 Sobic001G374800--Sobic004G117300 Sobic002G126200 Sobic002G126200 Sobic001G374800--Sobic002G126200 Sobic009G178900--Sobic001G511200 Sobic009G178900--Sobic006G069500 Sobic009G178900--Sobic003G273800 Sobic009G178900--Sobic004G180400 Sobic009G178900--Sobic003G364700 Sobic009G178900--Sobic009G233600 Sobic009G178900--Sobic004G077100 Sobic005G016300 Sobic005G016300 Sobic009G178900--Sobic005G016300 Sobic006G271100 Sobic006G271100 Sobic009G178900--Sobic006G271100 Sobic008G127200--Sobic002G356700 Sobic008G127200--Sobic010G145200 Sobic008G127200--Sobic003G201300 Sobic008G127200--Sobic001G511200 Sobic007G224800 Sobic007G224800 Sobic008G127200--Sobic007G224800 Sobic008G127200--Sobic003G178200 Sobic008G078600 Sobic008G078600 Sobic008G127200--Sobic008G078600 Sobic009G116766 Sobic009G116766 Sobic008G127200--Sobic009G116766 Sobic008G127200--Sobic003G364700 Sobic010G271000--Sobic009G233600 Sobic002G154300 Sobic002G154300 Sobic010G271000--Sobic002G154300 Sobic010G271000--Sobic003G273800 Sobic010G271000--Sobic001G511200 Sobic010G271000--Sobic009G229100 Sobic010G271000--Sobic006G069500 Sobic010G271000--Sobic002G356700 Sobic010G271000--Sobic003G364700 Sobic010G271000--Sobic002G237700
Octagon: transcription factors


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