Gene annotation
Transcriptome id Sobic.010G088950.1
Synonym -
Functional annotation -
UniProt A0A1W0VS33
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF421
NCBI CDD KOG0149; Predicted RNA-binding protein SEB4 (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G76460 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os06g11730.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001945 , Zm00025a052695 , Zm00025a033157 , Zm00025a042566
Brachypodium KQK01832 , KQK22196 , KQK18930 , KQK11638 , KQK11639
Barley HORVU4Hr1G057110.26 , HORVU4Hr1G057110.25 , HORVU4Hr1G057110.24 , HORVU4Hr1G057110.23 , HORVU4Hr1G057110.22 , HORVU4Hr1G057110.20 , HORVU6Hr1G078060.8 , HORVU6Hr1G078060.14 , HORVU6Hr1G078060.16 , HORVU6Hr1G078060.10 , HORVU6Hr1G078060.12 , HORVU4Hr1G057110.4 , HORVU4Hr1G057110.5 , HORVU4Hr1G057110.3 , HORVU3Hr1G053990.3 , HORVU3Hr1G053990.2 , HORVU3Hr1G053990.1 , HORVU7Hr1G036920.7 , HORVU7Hr1G036920.6 , HORVU7Hr1G036920.5 , HORVU7Hr1G036920.4 , HORVU7Hr1G036920.3 , HORVU7Hr1G036920.2 , HORVU7Hr1G036920.1 , HORVU7Hr1G036920.8 , HORVU4Hr1G057110.16 , HORVU4Hr1G057110.17 , HORVU4Hr1G057110.14 , HORVU4Hr1G057110.15 , HORVU4Hr1G057110.12 , HORVU4Hr1G057110.10 , HORVU4Hr1G057110.11 , HORVU4Hr1G057110.18 , HORVU4Hr1G057110.19 , HORVU6Hr1G078060.1 , HORVU6Hr1G078060.3 , HORVU6Hr1G078060.6 , HORVU7Hr1G036900.1
Wheat TraesCS7B02G084600 , TraesCS3D02G380100 , TraesCS3D02G380100 , TraesCS7D02G180800 , TraesCS6A02G318100 , TraesCS7A02G398200 , TraesCS7A02G398200 , TraesCS3A02G389600 , TraesCS3A02G389600 , TraesCS6D02G297300 , TraesCS4A02G106800 , TraesCS4A02G106800 , TraesCS4B02G197500 , TraesCS4B02G197500 , TraesCS6B02G348100 , TraesCS7A02G178700 , TraesCS7A02G178700 , TraesCS4D02G198000 , TraesCS4D02G198000 , TraesCS4D02G198000 , TraesCS4D02G198000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G166300 WRKY36, expressed -
2 Sobic.001G293600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@protein binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
3 Sobic.008G127200 expressed protein -
4 Sobic.002G043700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthranilate phosphoribosyltransferase, putative, expressed -
5 Sobic.003G231900 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
6 Sobic.010G236700 protein kinase domain containing protein, expressed K08819: cyclin-dependent kinase 12/13
7 Sobic.007G017900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
8 Sobic.010G022300 lung seven transmembrane domain containing protein, putative, expressed -
9 Sobic.003G022800 ribosomal protein L23 family protein, putative, expressed K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
10 Sobic.004G205200 PPR repeat containing protein, expressed -
11 Sobic.002G279600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G198100 - -
13 Sobic.009G167300 CCT motif family protein, expressed -
14 Sobic.001G511200 expressed protein -
15 Sobic.001G063900 RING-H2 finger protein ATL5D, putative, expressed -
16 Sobic.003G423100 NAM, putative, expressed -
17 Sobic.005G087600 AP2 domain containing protein, expressed -
18 Sobic.005G121100 ZOS11-03 - C2H2 zinc finger protein, expressed -
19 Sobic.004G264500 DUF617 domain containing protein, expressed -
20 Sobic.003G201300 hsp20/alpha crystallin family protein, putative, expressed -


Gene co-expression network
sample Sobic010G088950 Sobic010G088950 Sobic006G166300 Sobic006G166300 Sobic010G088950--Sobic006G166300 Sobic001G293600 Sobic001G293600 Sobic010G088950--Sobic001G293600 Sobic008G127200 Sobic008G127200 Sobic010G088950--Sobic008G127200 Sobic002G043700 Sobic002G043700 Sobic010G088950--Sobic002G043700 Sobic003G231900 Sobic003G231900 Sobic010G088950--Sobic003G231900 Sobic010G236700 Sobic010G236700 Sobic010G088950--Sobic010G236700 Sobic007G017900 Sobic007G017900 Sobic010G088950--Sobic007G017900 Sobic010G022300 Sobic010G022300 Sobic010G088950--Sobic010G022300 Sobic003G022800 Sobic003G022800 Sobic010G088950--Sobic003G022800 Sobic003G423100 Sobic003G423100 Sobic006G166300--Sobic003G423100 Sobic003G178200 Sobic003G178200 Sobic006G166300--Sobic003G178200 Sobic003G245700 Sobic003G245700 Sobic006G166300--Sobic003G245700 Sobic007G072901 Sobic007G072901 Sobic006G166300--Sobic007G072901 Sobic002G037000 Sobic002G037000 Sobic006G166300--Sobic002G037000 Sobic005G037500 Sobic005G037500 Sobic006G166300--Sobic005G037500 Sobic007G210400 Sobic007G210400 Sobic006G166300--Sobic007G210400 Sobic006G090201 Sobic006G090201 Sobic006G166300--Sobic006G090201 Sobic005G189400 Sobic005G189400 Sobic006G166300--Sobic005G189400 Sobic001G293600--Sobic010G088950 Sobic003G198100 Sobic003G198100 Sobic001G293600--Sobic003G198100 Sobic001G293600--Sobic010G236700 Sobic002G271100 Sobic002G271100 Sobic001G293600--Sobic002G271100 Sobic001G293600--Sobic006G166300 Sobic010G220400 Sobic010G220400 Sobic001G293600--Sobic010G220400 Sobic009G000700 Sobic009G000700 Sobic001G293600--Sobic009G000700 Sobic004G261100 Sobic004G261100 Sobic001G293600--Sobic004G261100 Sobic001G286000 Sobic001G286000 Sobic001G293600--Sobic001G286000 Sobic002G356700 Sobic002G356700 Sobic008G127200--Sobic002G356700 Sobic010G145200 Sobic010G145200 Sobic008G127200--Sobic010G145200 Sobic003G201300 Sobic003G201300 Sobic008G127200--Sobic003G201300 Sobic001G511200 Sobic001G511200 Sobic008G127200--Sobic001G511200 Sobic007G224800 Sobic007G224800 Sobic008G127200--Sobic007G224800 Sobic008G127200--Sobic003G178200 Sobic008G078600 Sobic008G078600 Sobic008G127200--Sobic008G078600 Sobic009G116766 Sobic009G116766 Sobic008G127200--Sobic009G116766 Sobic003G364700 Sobic003G364700 Sobic008G127200--Sobic003G364700 Sobic002G043700--Sobic008G127200 Sobic003G365400 Sobic003G365400 Sobic002G043700--Sobic003G365400 Sobic006G271100 Sobic006G271100 Sobic002G043700--Sobic006G271100 Sobic001G399400 Sobic001G399400 Sobic002G043700--Sobic001G399400 Sobic002G043700--Sobic001G511200 Sobic009G070000 Sobic009G070000 Sobic002G043700--Sobic009G070000 Sobic004G158000 Sobic004G158000 Sobic002G043700--Sobic004G158000 Sobic002G043700--Sobic007G017900 Sobic004G049800 Sobic004G049800 Sobic002G043700--Sobic004G049800 Sobic003G273800 Sobic003G273800 Sobic003G231900--Sobic003G273800 Sobic001G404000 Sobic001G404000 Sobic003G231900--Sobic001G404000 Sobic002G237700 Sobic002G237700 Sobic003G231900--Sobic002G237700 Sobic003G231900--Sobic001G511200 Sobic009G233600 Sobic009G233600 Sobic003G231900--Sobic009G233600 Sobic001G374800 Sobic001G374800 Sobic003G231900--Sobic001G374800 Sobic009G178900 Sobic009G178900 Sobic003G231900--Sobic009G178900 Sobic003G231900--Sobic008G127200 Sobic010G271000 Sobic010G271000 Sobic003G231900--Sobic010G271000 Sobic010G236700--Sobic003G198100 Sobic010G236700--Sobic006G166300 Sobic010G236700--Sobic001G293600 Sobic010G236700--Sobic010G088950 Sobic006G182800 Sobic006G182800 Sobic010G236700--Sobic006G182800 Sobic001G159850 Sobic001G159850 Sobic010G236700--Sobic001G159850 Sobic007G017900--Sobic003G178200 Sobic009G229100 Sobic009G229100 Sobic007G017900--Sobic009G229100 Sobic007G017900--Sobic010G145200 Sobic007G017900--Sobic003G245700 Sobic007G017900--Sobic007G072901 Sobic005G022400 Sobic005G022400 Sobic007G017900--Sobic005G022400 Sobic001G527500 Sobic001G527500 Sobic007G017900--Sobic001G527500 Sobic007G017900--Sobic005G189400 Sobic007G017900--Sobic003G364700 Sobic010G022300--Sobic003G022800 Sobic006G272450 Sobic006G272450 Sobic010G022300--Sobic006G272450 Sobic005G087600 Sobic005G087600 Sobic010G022300--Sobic005G087600 Sobic003G286100 Sobic003G286100 Sobic010G022300--Sobic003G286100 Sobic009G167300 Sobic009G167300 Sobic010G022300--Sobic009G167300 Sobic010G022300--Sobic010G088950 Sobic010G022300--Sobic003G201300 Sobic010G018800 Sobic010G018800 Sobic010G022300--Sobic010G018800 Sobic003G337100 Sobic003G337100 Sobic010G022300--Sobic003G337100 Sobic007G169000 Sobic007G169000 Sobic003G022800--Sobic007G169000 Sobic010G045200 Sobic010G045200 Sobic003G022800--Sobic010G045200 Sobic004G356600 Sobic004G356600 Sobic003G022800--Sobic004G356600 Sobic007G085350 Sobic007G085350 Sobic003G022800--Sobic007G085350 Sobic008G086401 Sobic008G086401 Sobic003G022800--Sobic008G086401 Sobic003G022800--Sobic009G167300 Sobic003G022800--Sobic003G201300 Sobic003G022800--Sobic009G116766 Sobic003G022800--Sobic005G087600
Octagon: transcription factors


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