Gene annotation
Transcriptome id Sobic.003G022800.2,Sobic.003G022800.1
Synonym Sb03g002160
Functional annotation ribosomal protein L23 family protein, putative, expressed
UniProt A0A1W0VVK3 , C5XL47
Pfam PF00276
Panther DB PTHR12059 PTHR12059:SF5
NCBI CDD -
KEGG Orthology K02892; RP-L23, MRPL23, large subunit ribosomal protein L23
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G39880 : Ribosomal protein L23/L15e family protein
RAP-DB (Rice) LOC_Os07g23244.1 : ribosomal protein L23 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022945
Brachypodium KQK21451 , KQK21450
Barley HORVU7Hr1G057640.3 , HORVU7Hr1G057640.2 , HORVU7Hr1G057640.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G169000 similar to Putative uncharacterized protein P0562A06.5(PubMedID : 29862293)@harpin-induced protein 1 domain containing protein, expressed -
2 Sobic.010G045200 expressed protein -
3 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.007G085350 - -
5 Sobic.008G086401 - -
6 Sobic.009G167300 CCT motif family protein, expressed -
7 Sobic.003G201300 hsp20/alpha crystallin family protein, putative, expressed -
8 Sobic.009G116766 - -
9 Sobic.005G087600 AP2 domain containing protein, expressed -
10 Sobic.006G239100 VQ domain containing protein, putative, expressed -
11 Sobic.003G222400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.003G337100 expressed protein -
13 Sobic.006G272450 - -
14 Sobic.006G075801 - -
15 Sobic.007G224800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.003G423100 NAM, putative, expressed -
17 Sobic.005G121100 ZOS11-03 - C2H2 zinc finger protein, expressed -
18 Sobic.009G164200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
20 Sobic.005G097700 - -


Gene co-expression network
sample Sobic003G022800 Sobic003G022800 Sobic007G169000 Sobic007G169000 Sobic003G022800--Sobic007G169000 Sobic010G045200 Sobic010G045200 Sobic003G022800--Sobic010G045200 Sobic004G356600 Sobic004G356600 Sobic003G022800--Sobic004G356600 Sobic007G085350 Sobic007G085350 Sobic003G022800--Sobic007G085350 Sobic008G086401 Sobic008G086401 Sobic003G022800--Sobic008G086401 Sobic009G167300 Sobic009G167300 Sobic003G022800--Sobic009G167300 Sobic003G201300 Sobic003G201300 Sobic003G022800--Sobic003G201300 Sobic009G116766 Sobic009G116766 Sobic003G022800--Sobic009G116766 Sobic005G087600 Sobic005G087600 Sobic003G022800--Sobic005G087600 Sobic007G169000--Sobic003G022800 Sobic002G171600 Sobic002G171600 Sobic007G169000--Sobic002G171600 Sobic007G209100 Sobic007G209100 Sobic007G169000--Sobic007G209100 Sobic004G342900 Sobic004G342900 Sobic007G169000--Sobic004G342900 Sobic004G296100 Sobic004G296100 Sobic007G169000--Sobic004G296100 Sobic009G178900 Sobic009G178900 Sobic007G169000--Sobic009G178900 Sobic003G337100 Sobic003G337100 Sobic007G169000--Sobic003G337100 Sobic003G364700 Sobic003G364700 Sobic007G169000--Sobic003G364700 Sobic003G047300 Sobic003G047300 Sobic007G169000--Sobic003G047300 Sobic005G231201 Sobic005G231201 Sobic010G045200--Sobic005G231201 Sobic010G045200--Sobic009G167300 Sobic006G239100 Sobic006G239100 Sobic010G045200--Sobic006G239100 Sobic009G164200 Sobic009G164200 Sobic010G045200--Sobic009G164200 Sobic010G231400 Sobic010G231400 Sobic010G045200--Sobic010G231400 Sobic006G201200 Sobic006G201200 Sobic010G045200--Sobic006G201200 Sobic008G127600 Sobic008G127600 Sobic010G045200--Sobic008G127600 Sobic004G098200 Sobic004G098200 Sobic010G045200--Sobic004G098200 Sobic001G172900 Sobic001G172900 Sobic010G045200--Sobic001G172900 Sobic006G090201 Sobic006G090201 Sobic004G356600--Sobic006G090201 Sobic007G072901 Sobic007G072901 Sobic004G356600--Sobic007G072901 Sobic009G010800 Sobic009G010800 Sobic004G356600--Sobic009G010800 Sobic001G361500 Sobic001G361500 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic003G357000 Sobic003G357000 Sobic004G356600--Sobic003G357000 Sobic004G356600--Sobic009G164200 Sobic006G185400 Sobic006G185400 Sobic004G356600--Sobic006G185400 Sobic003G245700 Sobic003G245700 Sobic004G356600--Sobic003G245700 Sobic007G085350--Sobic004G356600 Sobic002G356700 Sobic002G356700 Sobic007G085350--Sobic002G356700 Sobic006G272450 Sobic006G272450 Sobic007G085350--Sobic006G272450 Sobic007G085350--Sobic009G010800 Sobic007G085350--Sobic006G090201 Sobic007G085350--Sobic001G361500 Sobic007G085350--Sobic010G231400 Sobic006G209100 Sobic006G209100 Sobic007G085350--Sobic006G209100 Sobic007G085350--Sobic006G239100 Sobic008G086401--Sobic003G022800 Sobic006G212000 Sobic006G212000 Sobic008G086401--Sobic006G212000 Sobic004G357900 Sobic004G357900 Sobic008G086401--Sobic004G357900 Sobic008G086401--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic008G086401--Sobic005G097700 Sobic001G256900 Sobic001G256900 Sobic008G086401--Sobic001G256900 Sobic003G222400 Sobic003G222400 Sobic008G086401--Sobic003G222400 Sobic009G070900 Sobic009G070900 Sobic008G086401--Sobic009G070900 Sobic008G086401--Sobic007G169000 Sobic009G167300--Sobic006G209100 Sobic009G167300--Sobic003G201300 Sobic009G167300--Sobic010G231400 Sobic009G167300--Sobic006G201200 Sobic009G167300--Sobic009G164200 Sobic009G167300--Sobic001G361500 Sobic009G167300--Sobic006G185400 Sobic009G167300--Sobic001G172900 Sobic004G330500 Sobic004G330500 Sobic009G167300--Sobic004G330500 Sobic008G078600 Sobic008G078600 Sobic003G201300--Sobic008G078600 Sobic003G201300--Sobic001G361500 Sobic003G201300--Sobic009G164200 Sobic003G201300--Sobic009G116766 Sobic007G224800 Sobic007G224800 Sobic003G201300--Sobic007G224800 Sobic003G201300--Sobic009G167300 Sobic003G201300--Sobic006G209100 Sobic003G201300--Sobic005G087600 Sobic003G201300--Sobic010G231400 Sobic009G116766--Sobic009G164200 Sobic009G116766--Sobic003G201300 Sobic009G116766--Sobic001G361500 Sobic009G116766--Sobic003G423100 Sobic009G116766--Sobic006G090201 Sobic009G116766--Sobic004G330500 Sobic009G116766--Sobic006G185400 Sobic009G116766--Sobic003G245700 Sobic005G189400 Sobic005G189400 Sobic009G116766--Sobic005G189400 Sobic003G026100 Sobic003G026100 Sobic005G087600--Sobic003G026100 Sobic005G087600--Sobic001G361500 Sobic005G087600--Sobic009G164200 Sobic005G087600--Sobic010G231400 Sobic005G087600--Sobic006G185400 Sobic005G087600--Sobic006G090201 Sobic005G087600--Sobic006G209100 Sobic005G087600--Sobic004G330500 Sobic005G087600--Sobic005G189400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.