Gene annotation
Transcriptome id Sobic.006G075801.1
Synonym -
Functional annotation -
UniProt A0A1Z5RCT7
Pfam PF04564
Panther DB PTHR22849:SF46 PTHR22849
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004842; ubiquitin-protein transferase activity GO:0016567protein ubiquitination


Orthologs (automatic annotation)
TAIR AT5G64660 : CYS, MET, PRO, and GLY protein 2
RAP-DB (Rice) LOC_Os04g34140.1 : U-box protein CMPG1, putative, expressed
MaizeGDB (Corn) Zm00025a056025 , Zm00025a020593
Brachypodium KQJ99800 , KQK06037 , PNT61057
Barley HORVU2Hr1G074130.2 , HORVU2Hr1G074130.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G158200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G326000 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
3 Sobic.003G337100 expressed protein -
4 Sobic.006G239100 VQ domain containing protein, putative, expressed -
5 Sobic.009G167300 CCT motif family protein, expressed -
6 Sobic.004G342900 RALFL22 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
7 Sobic.005G231201 - -
8 Sobic.010G045200 expressed protein -
9 Sobic.003G022800 ribosomal protein L23 family protein, putative, expressed K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
10 Sobic.003G201300 hsp20/alpha crystallin family protein, putative, expressed -
11 Sobic.005G087600 AP2 domain containing protein, expressed -
12 Sobic.005G121100 ZOS11-03 - C2H2 zinc finger protein, expressed -
13 Sobic.004G300701 - -
14 Sobic.010G231400 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.003G283500 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
16 Sobic.007G085350 - -
17 Sobic.001G251300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
18 Sobic.006G201200 peptide transporter PTR2, putative, expressed -
19 Sobic.001G388900 biotin--protein ligase, putative, expressed K03801: lipoyl(octanoyl) transferase
20 Sobic.004G324900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G075801 Sobic006G075801 Sobic010G158200 Sobic010G158200 Sobic006G075801--Sobic010G158200 Sobic002G326000 Sobic002G326000 Sobic006G075801--Sobic002G326000 Sobic003G337100 Sobic003G337100 Sobic006G075801--Sobic003G337100 Sobic006G239100 Sobic006G239100 Sobic006G075801--Sobic006G239100 Sobic009G167300 Sobic009G167300 Sobic006G075801--Sobic009G167300 Sobic004G342900 Sobic004G342900 Sobic006G075801--Sobic004G342900 Sobic005G231201 Sobic005G231201 Sobic006G075801--Sobic005G231201 Sobic010G045200 Sobic010G045200 Sobic006G075801--Sobic010G045200 Sobic003G022800 Sobic003G022800 Sobic006G075801--Sobic003G022800 Sobic010G158200--Sobic006G075801 Sobic010G158200--Sobic002G326000 Sobic010G158200--Sobic003G337100 Sobic010G158200--Sobic004G342900 Sobic010G125400 Sobic010G125400 Sobic010G158200--Sobic010G125400 Sobic002G253000 Sobic002G253000 Sobic010G158200--Sobic002G253000 Sobic002G171600 Sobic002G171600 Sobic010G158200--Sobic002G171600 Sobic002G318501 Sobic002G318501 Sobic010G158200--Sobic002G318501 Sobic010G158200--Sobic009G167300 Sobic002G326000--Sobic010G158200 Sobic002G326000--Sobic004G342900 Sobic002G326000--Sobic003G337100 Sobic002G326000--Sobic006G075801 Sobic002G326000--Sobic009G167300 Sobic003G283500 Sobic003G283500 Sobic002G326000--Sobic003G283500 Sobic002G326000--Sobic002G253000 Sobic002G326000--Sobic010G045200 Sobic001G388900 Sobic001G388900 Sobic002G326000--Sobic001G388900 Sobic003G337100--Sobic009G167300 Sobic003G337100--Sobic004G342900 Sobic003G337100--Sobic002G326000 Sobic003G337100--Sobic010G158200 Sobic003G337100--Sobic010G045200 Sobic003G337100--Sobic006G075801 Sobic003G201300 Sobic003G201300 Sobic003G337100--Sobic003G201300 Sobic003G337100--Sobic006G239100 Sobic010G231400 Sobic010G231400 Sobic003G337100--Sobic010G231400 Sobic006G239100--Sobic010G231400 Sobic009G010800 Sobic009G010800 Sobic006G239100--Sobic009G010800 Sobic007G072901 Sobic007G072901 Sobic006G239100--Sobic007G072901 Sobic009G164200 Sobic009G164200 Sobic006G239100--Sobic009G164200 Sobic004G351866 Sobic004G351866 Sobic006G239100--Sobic004G351866 Sobic003G357000 Sobic003G357000 Sobic006G239100--Sobic003G357000 Sobic005G022400 Sobic005G022400 Sobic006G239100--Sobic005G022400 Sobic006G209100 Sobic006G209100 Sobic006G239100--Sobic006G209100 Sobic001G361500 Sobic001G361500 Sobic006G239100--Sobic001G361500 Sobic009G167300--Sobic006G209100 Sobic009G167300--Sobic003G201300 Sobic009G167300--Sobic010G231400 Sobic006G201200 Sobic006G201200 Sobic009G167300--Sobic006G201200 Sobic009G167300--Sobic009G164200 Sobic009G167300--Sobic001G361500 Sobic006G185400 Sobic006G185400 Sobic009G167300--Sobic006G185400 Sobic001G172900 Sobic001G172900 Sobic009G167300--Sobic001G172900 Sobic004G330500 Sobic004G330500 Sobic009G167300--Sobic004G330500 Sobic004G342900--Sobic003G337100 Sobic004G342900--Sobic002G326000 Sobic004G342900--Sobic010G158200 Sobic004G342900--Sobic002G253000 Sobic004G342900--Sobic006G075801 Sobic005G016600 Sobic005G016600 Sobic004G342900--Sobic005G016600 Sobic004G300701 Sobic004G300701 Sobic004G342900--Sobic004G300701 Sobic004G342900--Sobic003G283500 Sobic004G342900--Sobic009G167300 Sobic005G231201--Sobic006G201200 Sobic010G058650 Sobic010G058650 Sobic005G231201--Sobic010G058650 Sobic004G072950 Sobic004G072950 Sobic005G231201--Sobic004G072950 Sobic005G231201--Sobic010G231400 Sobic010G275550 Sobic010G275550 Sobic005G231201--Sobic010G275550 Sobic005G231201--Sobic009G164200 Sobic010G074960 Sobic010G074960 Sobic005G231201--Sobic010G074960 Sobic003G343100 Sobic003G343100 Sobic005G231201--Sobic003G343100 Sobic001G019100 Sobic001G019100 Sobic005G231201--Sobic001G019100 Sobic010G045200--Sobic005G231201 Sobic010G045200--Sobic009G167300 Sobic010G045200--Sobic006G239100 Sobic010G045200--Sobic009G164200 Sobic010G045200--Sobic010G231400 Sobic010G045200--Sobic006G201200 Sobic008G127600 Sobic008G127600 Sobic010G045200--Sobic008G127600 Sobic004G098200 Sobic004G098200 Sobic010G045200--Sobic004G098200 Sobic010G045200--Sobic001G172900 Sobic007G169000 Sobic007G169000 Sobic003G022800--Sobic007G169000 Sobic003G022800--Sobic010G045200 Sobic004G356600 Sobic004G356600 Sobic003G022800--Sobic004G356600 Sobic007G085350 Sobic007G085350 Sobic003G022800--Sobic007G085350 Sobic008G086401 Sobic008G086401 Sobic003G022800--Sobic008G086401 Sobic003G022800--Sobic009G167300 Sobic003G022800--Sobic003G201300 Sobic009G116766 Sobic009G116766 Sobic003G022800--Sobic009G116766 Sobic005G087600 Sobic005G087600 Sobic003G022800--Sobic005G087600
Octagon: transcription factors


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