Gene annotation
Transcriptome id Sobic.001G388900.1
Synonym LIP2, Sb01g036860
Functional annotation biotin--protein ligase, putative, expressed
UniProt C5X1S8
Pfam PF03099
Panther DB PTHR10993 PTHR10993:SF7
NCBI CDD KOG0325; Lipoyltransferase
KEGG Orthology K03801; lipoyl(octanoyl) transferase
Gene Ontology GO:0006464; cellular protein modification process


Orthologs (automatic annotation)
TAIR AT1G04640 : lipoyltransferase 2
RAP-DB (Rice) LOC_Os03g20560.1 : biotin--protein ligase, putative, expressed
MaizeGDB (Corn) Zm00025a044531
Brachypodium KQK21911
Barley HORVU4Hr1G052000.3 , HORVU4Hr1G052000.2 , HORVU4Hr1G052000.5 , HORVU4Hr1G052000.4 , HORVU4Hr1G052000.7 , HORVU4Hr1G052000.6 , HORVU4Hr1G052000.9 , HORVU4Hr1G052000.8 , HORVU4Hr1G052000.14 , HORVU4Hr1G052000.11 , HORVU4Hr1G052000.10 , HORVU4Hr1G052000.13 , HORVU4Hr1G052000.12
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G213600 expressed protein -
2 Sobic.001G251300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
3 Sobic.003G337100 expressed protein -
4 Sobic.002G326000 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
5 Sobic.010G158200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G064100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.007G223900 cytokinin-O-glucosyltransferase 1, putative, expressed -
8 Sobic.006G075801 - -
9 Sobic.003G283500 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
10 Sobic.004G342900 RALFL22 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
11 Sobic.010G120400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.010G045200 expressed protein -
13 Sobic.010G256500 OsFBDUF35 - F-box and DUF domain containing protein, expressed -
14 Sobic.009G244000 AMP-dependent synthetase("PubMedID : 26759170,PubMedID : 24597475")@AMP-binding enzyme, putative, expressed -
15 Sobic.004G163400 PAN domain-containing protein At5g03700 precursor, putative, expressed -
16 Sobic.005G016600 DUF567 domain containing protein, putative, expressed -
17 Sobic.003G212300 mitochondrial chaperone BCS1, putative, expressed -
18 Sobic.003G341200 expressed protein -
19 Sobic.004G300701 - -
20 Sobic.002G253000 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic001G388900 Sobic001G388900 Sobic003G213600 Sobic003G213600 Sobic001G388900--Sobic003G213600 Sobic001G251300 Sobic001G251300 Sobic001G388900--Sobic001G251300 Sobic003G337100 Sobic003G337100 Sobic001G388900--Sobic003G337100 Sobic002G326000 Sobic002G326000 Sobic001G388900--Sobic002G326000 Sobic010G158200 Sobic010G158200 Sobic001G388900--Sobic010G158200 Sobic009G064100 Sobic009G064100 Sobic001G388900--Sobic009G064100 Sobic007G223900 Sobic007G223900 Sobic001G388900--Sobic007G223900 Sobic006G075801 Sobic006G075801 Sobic001G388900--Sobic006G075801 Sobic003G283500 Sobic003G283500 Sobic001G388900--Sobic003G283500 Sobic010G045200 Sobic010G045200 Sobic003G213600--Sobic010G045200 Sobic003G213600--Sobic003G337100 Sobic007G114700 Sobic007G114700 Sobic003G213600--Sobic007G114700 Sobic003G213600--Sobic001G388900 Sobic010G258600 Sobic010G258600 Sobic003G213600--Sobic010G258600 Sobic003G198701 Sobic003G198701 Sobic003G213600--Sobic003G198701 Sobic009G167300 Sobic009G167300 Sobic003G213600--Sobic009G167300 Sobic009G244000 Sobic009G244000 Sobic003G213600--Sobic009G244000 Sobic003G213600--Sobic002G326000 Sobic001G251300--Sobic001G388900 Sobic001G251300--Sobic009G064100 Sobic001G251300--Sobic010G158200 Sobic010G256500 Sobic010G256500 Sobic001G251300--Sobic010G256500 Sobic005G016600 Sobic005G016600 Sobic001G251300--Sobic005G016600 Sobic001G251300--Sobic002G326000 Sobic002G253000 Sobic002G253000 Sobic001G251300--Sobic002G253000 Sobic002G314700 Sobic002G314700 Sobic001G251300--Sobic002G314700 Sobic005G139075 Sobic005G139075 Sobic001G251300--Sobic005G139075 Sobic003G337100--Sobic009G167300 Sobic004G342900 Sobic004G342900 Sobic003G337100--Sobic004G342900 Sobic003G337100--Sobic002G326000 Sobic003G337100--Sobic010G158200 Sobic003G337100--Sobic010G045200 Sobic003G337100--Sobic006G075801 Sobic003G201300 Sobic003G201300 Sobic003G337100--Sobic003G201300 Sobic006G239100 Sobic006G239100 Sobic003G337100--Sobic006G239100 Sobic010G231400 Sobic010G231400 Sobic003G337100--Sobic010G231400 Sobic002G326000--Sobic010G158200 Sobic002G326000--Sobic004G342900 Sobic002G326000--Sobic003G337100 Sobic002G326000--Sobic006G075801 Sobic002G326000--Sobic009G167300 Sobic002G326000--Sobic003G283500 Sobic002G326000--Sobic002G253000 Sobic002G326000--Sobic010G045200 Sobic002G326000--Sobic001G388900 Sobic010G158200--Sobic006G075801 Sobic010G158200--Sobic002G326000 Sobic010G158200--Sobic003G337100 Sobic010G158200--Sobic004G342900 Sobic010G125400 Sobic010G125400 Sobic010G158200--Sobic010G125400 Sobic010G158200--Sobic002G253000 Sobic002G171600 Sobic002G171600 Sobic010G158200--Sobic002G171600 Sobic002G318501 Sobic002G318501 Sobic010G158200--Sobic002G318501 Sobic010G158200--Sobic009G167300 Sobic009G064100--Sobic001G251300 Sobic009G064100--Sobic010G158200 Sobic009G064100--Sobic001G388900 Sobic009G064100--Sobic006G075801 Sobic009G064100--Sobic010G125400 Sobic009G064100--Sobic003G337100 Sobic009G064100--Sobic002G171600 Sobic009G064100--Sobic010G045200 Sobic004G023500 Sobic004G023500 Sobic009G064100--Sobic004G023500 Sobic007G223900--Sobic003G213600 Sobic007G223900--Sobic010G045200 Sobic007G223900--Sobic003G337100 Sobic009G134450 Sobic009G134450 Sobic007G223900--Sobic009G134450 Sobic007G223900--Sobic001G388900 Sobic007G207300 Sobic007G207300 Sobic007G223900--Sobic007G207300 Sobic007G223900--Sobic009G244000 Sobic003G085800 Sobic003G085800 Sobic007G223900--Sobic003G085800 Sobic009G221701 Sobic009G221701 Sobic007G223900--Sobic009G221701 Sobic006G075801--Sobic010G158200 Sobic006G075801--Sobic002G326000 Sobic006G075801--Sobic003G337100 Sobic006G075801--Sobic006G239100 Sobic006G075801--Sobic009G167300 Sobic006G075801--Sobic004G342900 Sobic005G231201 Sobic005G231201 Sobic006G075801--Sobic005G231201 Sobic006G075801--Sobic010G045200 Sobic003G022800 Sobic003G022800 Sobic006G075801--Sobic003G022800 Sobic003G283500--Sobic002G326000 Sobic004G300701 Sobic004G300701 Sobic003G283500--Sobic004G300701 Sobic004G025200 Sobic004G025200 Sobic003G283500--Sobic004G025200 Sobic003G283500--Sobic004G342900 Sobic009G165300 Sobic009G165300 Sobic003G283500--Sobic009G165300 Sobic003G283500--Sobic005G016600 Sobic002G420200 Sobic002G420200 Sobic003G283500--Sobic002G420200 Sobic006G134001 Sobic006G134001 Sobic003G283500--Sobic006G134001 Sobic003G283500--Sobic010G158200
Octagon: transcription factors


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