Gene annotation
Transcriptome id Sobic.009G244000.1
Synonym Sb09g029540
Functional annotation AMP-dependent synthetase( (PubMedID : 26759170,(PubMedID : 24597475)
AMP-binding enzyme, putative, expressed
UniProt C5YWE4
Pfam PF00501
Panther DB PTHR22754 PTHR22754:SF31
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G05160 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os05g50300.1 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a044690 , Zm00025a038644 , Zm00025a038645 , Zm00025a044689
Brachypodium KQK04653
Barley HORVU1Hr1G091480.1 , HORVU1Hr1G091480.2
Wheat TraesCS1B02G448500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G242600 RIPER9 - Ripening-related family protein precursor, putative, expressed -
2 Sobic.006G214101 - -
3 Sobic.010G149900 - -
4 Sobic.003G396400 harpin-induced protein 1 domain containing protein, expressed -
5 Sobic.006G239100 VQ domain containing protein, putative, expressed -
6 Sobic.005G106800 - -
7 Sobic.003G292800 expressed protein -
8 Sobic.009G221701 - -
9 Sobic.007G056400 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
10 Sobic.003G232200 AMP-binding enzyme, putative, expressed -
11 Sobic.006G153550 - -
12 Sobic.004G325766 - -
13 Sobic.003G299400 - -
14 Sobic.002G410050 - -
15 Sobic.010G014600 aspartic protease, putative, expressed -
16 Sobic.009G165050 - -
17 Sobic.010G217466 - -
18 Sobic.006G102700 expressed protein -
19 Sobic.004G072950 - -
20 Sobic.002G426600 expressed protein -


Gene co-expression network
sample Sobic009G244000 Sobic009G244000 Sobic006G242600 Sobic006G242600 Sobic009G244000--Sobic006G242600 Sobic006G214101 Sobic006G214101 Sobic009G244000--Sobic006G214101 Sobic010G149900 Sobic010G149900 Sobic009G244000--Sobic010G149900 Sobic003G396400 Sobic003G396400 Sobic009G244000--Sobic003G396400 Sobic006G239100 Sobic006G239100 Sobic009G244000--Sobic006G239100 Sobic005G106800 Sobic005G106800 Sobic009G244000--Sobic005G106800 Sobic003G292800 Sobic003G292800 Sobic009G244000--Sobic003G292800 Sobic009G221701 Sobic009G221701 Sobic009G244000--Sobic009G221701 Sobic007G056400 Sobic007G056400 Sobic009G244000--Sobic007G056400 Sobic006G242600--Sobic003G396400 Sobic006G242600--Sobic009G221701 Sobic006G242600--Sobic010G149900 Sobic010G217466 Sobic010G217466 Sobic006G242600--Sobic010G217466 Sobic006G242600--Sobic006G214101 Sobic006G242600--Sobic005G106800 Sobic002G410050 Sobic002G410050 Sobic006G242600--Sobic002G410050 Sobic002G149550 Sobic002G149550 Sobic006G242600--Sobic002G149550 Sobic002G429200 Sobic002G429200 Sobic006G242600--Sobic002G429200 Sobic010G014600 Sobic010G014600 Sobic006G214101--Sobic010G014600 Sobic006G214101--Sobic007G056400 Sobic009G165050 Sobic009G165050 Sobic006G214101--Sobic009G165050 Sobic004G072950 Sobic004G072950 Sobic006G214101--Sobic004G072950 Sobic006G214101--Sobic010G149900 Sobic006G214101--Sobic005G106800 Sobic004G325766 Sobic004G325766 Sobic006G214101--Sobic004G325766 Sobic003G045800 Sobic003G045800 Sobic006G214101--Sobic003G045800 Sobic002G004400 Sobic002G004400 Sobic006G214101--Sobic002G004400 Sobic010G149900--Sobic003G396400 Sobic010G149900--Sobic006G214101 Sobic010G149900--Sobic002G410050 Sobic010G149900--Sobic005G106800 Sobic006G153550 Sobic006G153550 Sobic010G149900--Sobic006G153550 Sobic010G149900--Sobic006G242600 Sobic010G149900--Sobic009G165050 Sobic010G149900--Sobic010G014600 Sobic001G229401 Sobic001G229401 Sobic010G149900--Sobic001G229401 Sobic003G396400--Sobic010G149900 Sobic003G396400--Sobic006G242600 Sobic003G396400--Sobic002G410050 Sobic003G396400--Sobic006G214101 Sobic003G396400--Sobic005G106800 Sobic003G396400--Sobic009G165050 Sobic003G396400--Sobic009G221701 Sobic003G396400--Sobic010G217466 Sobic003G396400--Sobic007G056400 Sobic010G231400 Sobic010G231400 Sobic006G239100--Sobic010G231400 Sobic009G010800 Sobic009G010800 Sobic006G239100--Sobic009G010800 Sobic007G072901 Sobic007G072901 Sobic006G239100--Sobic007G072901 Sobic009G164200 Sobic009G164200 Sobic006G239100--Sobic009G164200 Sobic004G351866 Sobic004G351866 Sobic006G239100--Sobic004G351866 Sobic003G357000 Sobic003G357000 Sobic006G239100--Sobic003G357000 Sobic005G022400 Sobic005G022400 Sobic006G239100--Sobic005G022400 Sobic006G209100 Sobic006G209100 Sobic006G239100--Sobic006G209100 Sobic001G361500 Sobic001G361500 Sobic006G239100--Sobic001G361500 Sobic003G299400 Sobic003G299400 Sobic005G106800--Sobic003G299400 Sobic005G106800--Sobic009G165050 Sobic005G106800--Sobic004G351866 Sobic005G106800--Sobic004G325766 Sobic005G106800--Sobic003G357000 Sobic005G106800--Sobic003G045800 Sobic010G275550 Sobic010G275550 Sobic005G106800--Sobic010G275550 Sobic005G106800--Sobic010G014600 Sobic005G106800--Sobic006G214101 Sobic003G292800--Sobic002G429200 Sobic002G375600 Sobic002G375600 Sobic003G292800--Sobic002G375600 Sobic003G292800--Sobic005G106800 Sobic001G060666 Sobic001G060666 Sobic003G292800--Sobic001G060666 Sobic003G292800--Sobic003G299400 Sobic002G189350 Sobic002G189350 Sobic003G292800--Sobic002G189350 Sobic005G230600 Sobic005G230600 Sobic003G292800--Sobic005G230600 Sobic010G074960 Sobic010G074960 Sobic003G292800--Sobic010G074960 Sobic009G004000 Sobic009G004000 Sobic003G292800--Sobic009G004000 Sobic009G221701--Sobic010G217466 Sobic009G221701--Sobic002G149550 Sobic009G221701--Sobic006G242600 Sobic009G221701--Sobic002G429200 Sobic009G221701--Sobic003G396400 Sobic009G221701--Sobic005G106800 Sobic009G221701--Sobic003G299400 Sobic002G285950 Sobic002G285950 Sobic009G221701--Sobic002G285950 Sobic006G116600 Sobic006G116600 Sobic009G221701--Sobic006G116600 Sobic007G056400--Sobic006G214101 Sobic007G056400--Sobic010G014600 Sobic007G056400--Sobic005G106800 Sobic007G056400--Sobic009G165050 Sobic007G056400--Sobic007G072901 Sobic007G056400--Sobic003G357000 Sobic007G056400--Sobic004G325766 Sobic007G056400--Sobic004G351866 Sobic005G189400 Sobic005G189400 Sobic007G056400--Sobic005G189400
Octagon: transcription factors


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