Gene annotation
Transcriptome id Sobic.010G158200.1
Synonym Sb10g021060
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5Z412
Pfam PF05078
Panther DB PTHR31621 PTHR31621:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18425 : Protein of unknown function (DUF679)
RAP-DB (Rice) LOC_Os06g24490.1 : expressed protein
MaizeGDB (Corn) Zm00025a050949
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G075801 - -
2 Sobic.002G326000 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
3 Sobic.003G337100 expressed protein -
4 Sobic.004G342900 RALFL22 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
5 Sobic.010G125400 chaperone protein dnaJ, putative, expressed -
6 Sobic.002G253000 no apical meristem protein, putative, expressed -
7 Sobic.002G171600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
8 Sobic.002G318501 - -
9 Sobic.009G167300 CCT motif family protein, expressed -
10 Sobic.001G251300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
11 Sobic.003G283500 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
12 Sobic.009G064100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.010G045200 expressed protein -
14 Sobic.001G216800 expressed protein -
15 Sobic.001G388900 biotin--protein ligase, putative, expressed K03801: lipoyl(octanoyl) transferase
16 Sobic.005G231201 - -
17 Sobic.004G128000 expressed protein -
18 Sobic.003G022800 ribosomal protein L23 family protein, putative, expressed K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
19 Sobic.004G300701 - -
20 Sobic.006G239100 VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G158200 Sobic010G158200 Sobic006G075801 Sobic006G075801 Sobic010G158200--Sobic006G075801 Sobic002G326000 Sobic002G326000 Sobic010G158200--Sobic002G326000 Sobic003G337100 Sobic003G337100 Sobic010G158200--Sobic003G337100 Sobic004G342900 Sobic004G342900 Sobic010G158200--Sobic004G342900 Sobic010G125400 Sobic010G125400 Sobic010G158200--Sobic010G125400 Sobic002G253000 Sobic002G253000 Sobic010G158200--Sobic002G253000 Sobic002G171600 Sobic002G171600 Sobic010G158200--Sobic002G171600 Sobic002G318501 Sobic002G318501 Sobic010G158200--Sobic002G318501 Sobic009G167300 Sobic009G167300 Sobic010G158200--Sobic009G167300 Sobic006G075801--Sobic010G158200 Sobic006G075801--Sobic002G326000 Sobic006G075801--Sobic003G337100 Sobic006G239100 Sobic006G239100 Sobic006G075801--Sobic006G239100 Sobic006G075801--Sobic009G167300 Sobic006G075801--Sobic004G342900 Sobic005G231201 Sobic005G231201 Sobic006G075801--Sobic005G231201 Sobic010G045200 Sobic010G045200 Sobic006G075801--Sobic010G045200 Sobic003G022800 Sobic003G022800 Sobic006G075801--Sobic003G022800 Sobic002G326000--Sobic010G158200 Sobic002G326000--Sobic004G342900 Sobic002G326000--Sobic003G337100 Sobic002G326000--Sobic006G075801 Sobic002G326000--Sobic009G167300 Sobic003G283500 Sobic003G283500 Sobic002G326000--Sobic003G283500 Sobic002G326000--Sobic002G253000 Sobic002G326000--Sobic010G045200 Sobic001G388900 Sobic001G388900 Sobic002G326000--Sobic001G388900 Sobic003G337100--Sobic009G167300 Sobic003G337100--Sobic004G342900 Sobic003G337100--Sobic002G326000 Sobic003G337100--Sobic010G158200 Sobic003G337100--Sobic010G045200 Sobic003G337100--Sobic006G075801 Sobic003G201300 Sobic003G201300 Sobic003G337100--Sobic003G201300 Sobic003G337100--Sobic006G239100 Sobic010G231400 Sobic010G231400 Sobic003G337100--Sobic010G231400 Sobic004G342900--Sobic003G337100 Sobic004G342900--Sobic002G326000 Sobic004G342900--Sobic010G158200 Sobic004G342900--Sobic002G253000 Sobic004G342900--Sobic006G075801 Sobic005G016600 Sobic005G016600 Sobic004G342900--Sobic005G016600 Sobic004G300701 Sobic004G300701 Sobic004G342900--Sobic004G300701 Sobic004G342900--Sobic003G283500 Sobic004G342900--Sobic009G167300 Sobic010G125400--Sobic010G158200 Sobic010G125400--Sobic002G326000 Sobic010G125400--Sobic002G253000 Sobic010G125400--Sobic002G318501 Sobic010G125400--Sobic006G075801 Sobic001G251300 Sobic001G251300 Sobic010G125400--Sobic001G251300 Sobic009G064100 Sobic009G064100 Sobic010G125400--Sobic009G064100 Sobic001G161601 Sobic001G161601 Sobic010G125400--Sobic001G161601 Sobic010G125400--Sobic002G171600 Sobic002G253000--Sobic002G318501 Sobic010G057100 Sobic010G057100 Sobic002G253000--Sobic010G057100 Sobic009G015000 Sobic009G015000 Sobic002G253000--Sobic009G015000 Sobic002G253000--Sobic005G016600 Sobic002G314700 Sobic002G314700 Sobic002G253000--Sobic002G314700 Sobic002G253000--Sobic004G342900 Sobic004G099500 Sobic004G099500 Sobic002G253000--Sobic004G099500 Sobic004G128000 Sobic004G128000 Sobic002G253000--Sobic004G128000 Sobic001G062600 Sobic001G062600 Sobic002G253000--Sobic001G062600 Sobic007G169000 Sobic007G169000 Sobic002G171600--Sobic007G169000 Sobic007G209100 Sobic007G209100 Sobic002G171600--Sobic007G209100 Sobic002G171600--Sobic010G158200 Sobic002G171600--Sobic004G342900 Sobic002G171600--Sobic003G337100 Sobic004G296100 Sobic004G296100 Sobic002G171600--Sobic004G296100 Sobic002G171600--Sobic002G326000 Sobic002G171600--Sobic003G022800 Sobic002G171600--Sobic006G075801 Sobic002G318501--Sobic002G253000 Sobic001G425300 Sobic001G425300 Sobic002G318501--Sobic001G425300 Sobic002G318501--Sobic002G314700 Sobic001G313200 Sobic001G313200 Sobic002G318501--Sobic001G313200 Sobic005G139075 Sobic005G139075 Sobic002G318501--Sobic005G139075 Sobic005G029200 Sobic005G029200 Sobic002G318501--Sobic005G029200 Sobic003G322532 Sobic003G322532 Sobic002G318501--Sobic003G322532 Sobic004G189400 Sobic004G189400 Sobic002G318501--Sobic004G189400 Sobic006G099900 Sobic006G099900 Sobic002G318501--Sobic006G099900 Sobic006G209100 Sobic006G209100 Sobic009G167300--Sobic006G209100 Sobic009G167300--Sobic003G201300 Sobic009G167300--Sobic010G231400 Sobic006G201200 Sobic006G201200 Sobic009G167300--Sobic006G201200 Sobic009G164200 Sobic009G164200 Sobic009G167300--Sobic009G164200 Sobic001G361500 Sobic001G361500 Sobic009G167300--Sobic001G361500 Sobic006G185400 Sobic006G185400 Sobic009G167300--Sobic006G185400 Sobic001G172900 Sobic001G172900 Sobic009G167300--Sobic001G172900 Sobic004G330500 Sobic004G330500 Sobic009G167300--Sobic004G330500
Octagon: transcription factors


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