Gene annotation
Transcriptome id Sobic.003G222400.1
Synonym Sb03g028070
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5XR32
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF277
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT5G53140 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os05g50970.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a038545
Brachypodium KQK08751 , KQK08753 , KQK08752 , PNT72397 , PNT72396 , PNT72395 , PNT72394 , PNT72393 , PNT72392 , PNT72391
Barley -
Wheat TraesCS3A02G222800 , TraesCS6A02G355600 , TraesCS3D02G230500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G272450 - -
2 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
3 Sobic.009G070900 - -
4 Sobic.001G042400 expressed protein -
5 Sobic.010G256433 - -
6 Sobic.007G085350 - -
7 Sobic.009G233600 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
8 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.002G034400 expressed protein -
10 Sobic.003G022800 ribosomal protein L23 family protein, putative, expressed K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
11 Sobic.010G045200 expressed protein -
12 Sobic.010G018800 impaired sucrose induction 1, putative, expressed -
13 Sobic.006G090201 - -
14 Sobic.009G164200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
15 Sobic.008G023500 expressed protein -
16 Sobic.003G051800 expressed protein K03024: RPC7, DNA-directed RNA polymerase III subunit RPC7
17 Sobic.003G178200 tetratricopeptide repeat containing protein, putative, expressed -
18 Sobic.008G127600 MBTB45 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.003G364700 expressed protein -
20 Sobic.009G229100 expressed protein -


Gene co-expression network
sample Sobic003G222400 Sobic003G222400 Sobic006G272450 Sobic006G272450 Sobic003G222400--Sobic006G272450 Sobic002G356700 Sobic002G356700 Sobic003G222400--Sobic002G356700 Sobic009G070900 Sobic009G070900 Sobic003G222400--Sobic009G070900 Sobic001G042400 Sobic001G042400 Sobic003G222400--Sobic001G042400 Sobic010G256433 Sobic010G256433 Sobic003G222400--Sobic010G256433 Sobic007G085350 Sobic007G085350 Sobic003G222400--Sobic007G085350 Sobic009G233600 Sobic009G233600 Sobic003G222400--Sobic009G233600 Sobic004G356600 Sobic004G356600 Sobic003G222400--Sobic004G356600 Sobic002G034400 Sobic002G034400 Sobic003G222400--Sobic002G034400 Sobic009G164200 Sobic009G164200 Sobic006G272450--Sobic009G164200 Sobic008G023500 Sobic008G023500 Sobic006G272450--Sobic008G023500 Sobic006G090201 Sobic006G090201 Sobic006G272450--Sobic006G090201 Sobic009G010800 Sobic009G010800 Sobic006G272450--Sobic009G010800 Sobic006G272450--Sobic009G070900 Sobic006G185400 Sobic006G185400 Sobic006G272450--Sobic006G185400 Sobic003G245700 Sobic003G245700 Sobic006G272450--Sobic003G245700 Sobic004G330500 Sobic004G330500 Sobic006G272450--Sobic004G330500 Sobic005G189400 Sobic005G189400 Sobic006G272450--Sobic005G189400 Sobic002G356700--Sobic009G233600 Sobic003G178200 Sobic003G178200 Sobic002G356700--Sobic003G178200 Sobic002G356700--Sobic003G245700 Sobic002G356700--Sobic006G090201 Sobic005G022400 Sobic005G022400 Sobic002G356700--Sobic005G022400 Sobic001G361500 Sobic001G361500 Sobic002G356700--Sobic001G361500 Sobic002G356700--Sobic008G023500 Sobic002G356700--Sobic009G164200 Sobic007G072901 Sobic007G072901 Sobic002G356700--Sobic007G072901 Sobic009G070900--Sobic006G272450 Sobic001G378550 Sobic001G378550 Sobic009G070900--Sobic001G378550 Sobic002G052500 Sobic002G052500 Sobic009G070900--Sobic002G052500 Sobic009G070900--Sobic008G023500 Sobic009G070900--Sobic006G090201 Sobic009G070900--Sobic003G245700 Sobic009G070900--Sobic009G164200 Sobic009G070900--Sobic002G356700 Sobic009G070900--Sobic006G185400 Sobic001G042400--Sobic010G256433 Sobic001G042400--Sobic006G272450 Sobic009G236700 Sobic009G236700 Sobic001G042400--Sobic009G236700 Sobic001G042400--Sobic009G070900 Sobic004G082000 Sobic004G082000 Sobic001G042400--Sobic004G082000 Sobic001G042400--Sobic003G222400 Sobic008G127600 Sobic008G127600 Sobic001G042400--Sobic008G127600 Sobic003G084800 Sobic003G084800 Sobic001G042400--Sobic003G084800 Sobic005G160900 Sobic005G160900 Sobic001G042400--Sobic005G160900 Sobic010G256433--Sobic001G042400 Sobic010G256433--Sobic009G236700 Sobic010G256433--Sobic003G222400 Sobic010G256433--Sobic004G082000 Sobic010G256433--Sobic006G272450 Sobic010G256433--Sobic009G070900 Sobic007G213200 Sobic007G213200 Sobic010G256433--Sobic007G213200 Sobic005G138900 Sobic005G138900 Sobic010G256433--Sobic005G138900 Sobic010G018800 Sobic010G018800 Sobic010G256433--Sobic010G018800 Sobic007G085350--Sobic004G356600 Sobic007G085350--Sobic002G356700 Sobic007G085350--Sobic006G272450 Sobic007G085350--Sobic009G010800 Sobic007G085350--Sobic006G090201 Sobic007G085350--Sobic001G361500 Sobic010G231400 Sobic010G231400 Sobic007G085350--Sobic010G231400 Sobic006G209100 Sobic006G209100 Sobic007G085350--Sobic006G209100 Sobic006G239100 Sobic006G239100 Sobic007G085350--Sobic006G239100 Sobic009G233600--Sobic002G356700 Sobic009G229100 Sobic009G229100 Sobic009G233600--Sobic009G229100 Sobic003G364700 Sobic003G364700 Sobic009G233600--Sobic003G364700 Sobic001G511200 Sobic001G511200 Sobic009G233600--Sobic001G511200 Sobic009G233600--Sobic004G356600 Sobic009G233600--Sobic005G022400 Sobic010G145200 Sobic010G145200 Sobic009G233600--Sobic010G145200 Sobic009G233600--Sobic003G178200 Sobic002G237700 Sobic002G237700 Sobic009G233600--Sobic002G237700 Sobic004G356600--Sobic006G090201 Sobic004G356600--Sobic007G072901 Sobic004G356600--Sobic009G010800 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic003G357000 Sobic003G357000 Sobic004G356600--Sobic003G357000 Sobic004G356600--Sobic009G164200 Sobic004G356600--Sobic006G185400 Sobic004G356600--Sobic003G245700 Sobic002G034400--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic002G034400--Sobic005G097700 Sobic002G034400--Sobic002G356700 Sobic006G228400 Sobic006G228400 Sobic002G034400--Sobic006G228400 Sobic002G034400--Sobic002G052500 Sobic002G034400--Sobic006G090201 Sobic006G260600 Sobic006G260600 Sobic002G034400--Sobic006G260600 Sobic002G004400 Sobic002G004400 Sobic002G034400--Sobic002G004400 Sobic002G034400--Sobic003G245700
Octagon: transcription factors


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