Gene annotation
Transcriptome id Sobic.009G164200.1
Synonym HTB4, Sb09g022610
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5YZA2
Pfam PF00125
Panther DB PTHR23428
NCBI CDD KOG1744; Histone H2B
KEGG Orthology K11252; histone H2B
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT3G45980 : Histone superfamily protein
RAP-DB (Rice) LOC_Os08g38300.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026935 , Zm00025a023416 , Zm00025a056569 , Zm00025a047105 , Zm00025a039690 , Zm00025a032481 , Zm00025a005748 , Zm00025a028433 , Zm00025a052736 , Zm00025a013950 , Zm00025a015351 , Zm00025a030742 , Zm00025a038415 , Zm00025a053512
Brachypodium KQK02276 , KQK13244 , KQK10503 , KQK06664 , KQK02281 , PNT74146 , KQK05897 , KQK19386 , PNT76946 , KQK01215 , KQK06658 , KQK22306 , KQK20688
Barley HORVU1Hr1G078480.8 , HORVU1Hr1G078480.1 , HORVU1Hr1G078480.4 , HORVU1Hr1G078480.6 , HORVU1Hr1G078480.7 , HORVU1Hr1G091370.1 , HORVU0Hr1G001420.1 , HORVU3Hr1G086610.2 , HORVU3Hr1G086610.3 , HORVU3Hr1G086610.1 , HORVU3Hr1G086610.4 , HORVU7Hr1G110310.1 , HORVU3Hr1G086620.1 , HORVU1Hr1G078480.3 , HORVU3Hr1G013530.1 , HORVU3Hr1G013530.2 , HORVU6Hr1G015760.2 , HORVU6Hr1G015760.1 , HORVU6Hr1G008470.1 , HORVU6Hr1G008470.2 , HORVU3Hr1G015810.1 , HORVU3Hr1G015810.2 , HORVU3Hr1G015810.3 , HORVU7Hr1G110130.2 , HORVU7Hr1G110130.1 , HORVU1Hr1G056530.1 , HORVU1Hr1G056530.2 , HORVU1Hr1G056530.3 , HORVU1Hr1G056530.4 , HORVU4Hr1G070240.4 , HORVU4Hr1G070240.3 , HORVU4Hr1G070240.2 , HORVU4Hr1G070240.1 , HORVU6Hr1G006110.1 , HORVU4Hr1G009040.1 , HORVU4Hr1G009040.3 , HORVU4Hr1G009040.2 , HORVU7Hr1G110330.1 , HORVU5Hr1G094500.2 , HORVU7Hr1G110170.1 , HORVU7Hr1G110330.2 , HORVU4Hr1G073130.4 , HORVU6Hr1G083110.1 , HORVU4Hr1G073130.1 , HORVU4Hr1G073130.2 , HORVU4Hr1G073130.3 , HORVU1Hr1G078530.3 , HORVU1Hr1G078530.4 , HORVU1Hr1G078530.5 , HORVU1Hr1G078530.6 , HORVU1Hr1G078530.7 , HORVU1Hr1G058500.3 , HORVU3Hr1G013680.2 , HORVU3Hr1G013680.1 , HORVU2Hr1G077630.1 , HORVU2Hr1G077630.3 , HORVU2Hr1G077630.2 , HORVU3Hr1G034060.1 , HORVU3Hr1G034060.2 , HORVU1Hr1G049920.1 , HORVU1Hr1G066130.1 , HORVU6Hr1G015790.2 , HORVU6Hr1G015790.3 , HORVU6Hr1G015790.1 , HORVU1Hr1G058500.2 , HORVU1Hr1G058500.1 , HORVU7Hr1G110290.1 , HORVU1Hr1G085540.1 , HORVU5Hr1G094500.3 , HORVU0Hr1G006420.1 , HORVU1Hr1G072190.1 , HORVU1Hr1G072190.2 , HORVU1Hr1G072190.3 , HORVU1Hr1G072190.4 , HORVU1Hr1G072190.5 , HORVU5Hr1G094500.1 , HORVU6Hr1G087190.1 , HORVU6Hr1G008320.1 , HORVU6Hr1G008320.2 , HORVU7Hr1G110190.1 , HORVU7Hr1G110090.1 , HORVU7Hr1G110190.2 , HORVU6Hr1G005950.1 , HORVU6Hr1G005950.3 , HORVU6Hr1G005950.2 , HORVU1Hr1G078530.10
Wheat TraesCSU02G169400 , TraesCS4D02G205300 , TraesCSU02G170900 , TraesCSU02G170400 , TraesCS2A02G312400 , TraesCSU02G169700 , TraesCS1A02G190400 , TraesCS7B02G394800 , TraesCS7B02G394500 , TraesCSU02G170600 , TraesCS6B02G055300 , TraesCSU02G169300 , TraesCSU02G169800 , TraesCS3A02G357600 , TraesCSU02G170500 , TraesCSU02G170700 , TraesCS7B02G394400 , TraesCS3A02G075800 , TraesCSU02G169900 , TraesCS6B02G055500 , TraesCS4A02G030500 , TraesCSU02G171100 , TraesCS1D02G232900 , TraesCSU02G171000 , TraesCSU02G169500
Populus PNT40327 , PNS96561 , PNT22397


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G330500 expressed protein -
2 Sobic.006G185400 - -
3 Sobic.008G023500 expressed protein -
4 Sobic.005G189400 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.001G361500 expressed protein -
6 Sobic.006G209100 - -
7 Sobic.007G152200 cytokinesis negative regulator RCP1, putative, expressed -
8 Sobic.002G205201 - -
9 Sobic.005G037500 expressed protein -
10 Sobic.006G090201 - -
11 Sobic.002G037000 ZOS7-02 - C2H2 zinc finger protein, expressed -
12 Sobic.010G231400 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.003G245700 3-5 exonuclease domain-containing protein, putative, expressed -
14 Sobic.010G275550 - -
15 Sobic.001G172900 - -
16 Sobic.003G357000 - -
17 Sobic.006G201200 peptide transporter PTR2, putative, expressed -
18 Sobic.009G010800 expressed protein -
19 Sobic.003G178200 tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.007G072901 - -


Gene co-expression network
sample Sobic009G164200 Sobic009G164200 Sobic004G330500 Sobic004G330500 Sobic009G164200--Sobic004G330500 Sobic006G185400 Sobic006G185400 Sobic009G164200--Sobic006G185400 Sobic008G023500 Sobic008G023500 Sobic009G164200--Sobic008G023500 Sobic005G189400 Sobic005G189400 Sobic009G164200--Sobic005G189400 Sobic001G361500 Sobic001G361500 Sobic009G164200--Sobic001G361500 Sobic006G209100 Sobic006G209100 Sobic009G164200--Sobic006G209100 Sobic007G152200 Sobic007G152200 Sobic009G164200--Sobic007G152200 Sobic002G205201 Sobic002G205201 Sobic009G164200--Sobic002G205201 Sobic005G037500 Sobic005G037500 Sobic009G164200--Sobic005G037500 Sobic004G330500--Sobic005G189400 Sobic004G330500--Sobic006G185400 Sobic004G330500--Sobic007G152200 Sobic004G330500--Sobic002G205201 Sobic004G330500--Sobic001G361500 Sobic004G330500--Sobic006G209100 Sobic004G330500--Sobic008G023500 Sobic004G330500--Sobic005G037500 Sobic006G090201 Sobic006G090201 Sobic004G330500--Sobic006G090201 Sobic006G185400--Sobic004G330500 Sobic006G185400--Sobic005G189400 Sobic006G185400--Sobic001G361500 Sobic006G185400--Sobic007G152200 Sobic006G185400--Sobic002G205201 Sobic006G185400--Sobic006G209100 Sobic006G185400--Sobic008G023500 Sobic006G185400--Sobic005G037500 Sobic006G185400--Sobic009G164200 Sobic008G023500--Sobic006G185400 Sobic008G023500--Sobic004G330500 Sobic008G023500--Sobic005G189400 Sobic008G023500--Sobic009G164200 Sobic003G245700 Sobic003G245700 Sobic008G023500--Sobic003G245700 Sobic008G023500--Sobic002G205201 Sobic008G023500--Sobic007G152200 Sobic008G023500--Sobic006G209100 Sobic008G023500--Sobic001G361500 Sobic005G189400--Sobic004G330500 Sobic005G189400--Sobic006G185400 Sobic005G189400--Sobic007G152200 Sobic005G189400--Sobic002G205201 Sobic005G189400--Sobic001G361500 Sobic005G189400--Sobic006G209100 Sobic005G189400--Sobic008G023500 Sobic005G189400--Sobic003G245700 Sobic005G189400--Sobic006G090201 Sobic001G361500--Sobic006G185400 Sobic001G361500--Sobic004G330500 Sobic001G361500--Sobic005G189400 Sobic001G361500--Sobic006G209100 Sobic001G361500--Sobic002G205201 Sobic001G361500--Sobic007G152200 Sobic001G361500--Sobic009G164200 Sobic001G361500--Sobic008G023500 Sobic001G361500--Sobic005G037500 Sobic006G209100--Sobic006G185400 Sobic006G209100--Sobic004G330500 Sobic006G209100--Sobic005G189400 Sobic006G209100--Sobic001G361500 Sobic006G209100--Sobic002G205201 Sobic006G209100--Sobic007G152200 Sobic006G209100--Sobic009G164200 Sobic006G209100--Sobic008G023500 Sobic006G209100--Sobic005G037500 Sobic007G152200--Sobic004G330500 Sobic007G152200--Sobic005G189400 Sobic007G152200--Sobic006G185400 Sobic007G152200--Sobic002G205201 Sobic007G152200--Sobic001G361500 Sobic007G152200--Sobic006G209100 Sobic007G152200--Sobic008G023500 Sobic007G152200--Sobic009G164200 Sobic007G152200--Sobic005G037500 Sobic002G205201--Sobic006G185400 Sobic002G205201--Sobic004G330500 Sobic002G205201--Sobic005G189400 Sobic010G275550 Sobic010G275550 Sobic002G205201--Sobic010G275550 Sobic002G205201--Sobic007G152200 Sobic002G205201--Sobic001G361500 Sobic002G205201--Sobic006G209100 Sobic002G205201--Sobic008G023500 Sobic002G205201--Sobic005G037500 Sobic002G037000 Sobic002G037000 Sobic005G037500--Sobic002G037000 Sobic005G037500--Sobic006G185400 Sobic005G037500--Sobic004G330500 Sobic005G037500--Sobic005G189400 Sobic005G037500--Sobic002G205201 Sobic005G037500--Sobic007G152200 Sobic005G037500--Sobic006G209100 Sobic005G037500--Sobic001G361500 Sobic005G037500--Sobic008G023500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.