Gene annotation
Transcriptome id Sobic.001G293600.1
Synonym Sb01g028680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
protein binding protein, putative, expressed
UniProt A0A1B6QLW2
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF131
NCBI CDD KOG1100; Predicted E3 ubiquitin ligase
KEGG Orthology K19042; E3 ubiquitin-protein ligase BOI and related proteins
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17680 : SBP (S-ribonuclease binding protein) family protein
RAP-DB (Rice) LOC_Os10g41580.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a003425 , Zm00025a051874
Brachypodium -
Barley HORVU1Hr1G054930.2 , HORVU1Hr1G054930.3
Wheat TraesCS1A02G215300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G088950 - -
2 Sobic.003G198100 - -
3 Sobic.010G236700 protein kinase domain containing protein, expressed K08819: cyclin-dependent kinase 12/13
4 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
5 Sobic.006G166300 WRKY36, expressed -
6 Sobic.010G220400 -(PubMedID : 23108465)@OsFBX202 - F-box domain containing protein, expressed -
7 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
8 Sobic.004G261100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G286000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.008G066000 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
11 Sobic.004G155150 - -
12 Sobic.003G078501 - -
13 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
14 Sobic.009G195800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
15 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.001G159850 - -
19 Sobic.001G159850 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic001G293600 Sobic001G293600 Sobic010G088950 Sobic010G088950 Sobic001G293600--Sobic010G088950 Sobic003G198100 Sobic003G198100 Sobic001G293600--Sobic003G198100 Sobic010G236700 Sobic010G236700 Sobic001G293600--Sobic010G236700 Sobic002G271100 Sobic002G271100 Sobic001G293600--Sobic002G271100 Sobic006G166300 Sobic006G166300 Sobic001G293600--Sobic006G166300 Sobic010G220400 Sobic010G220400 Sobic001G293600--Sobic010G220400 Sobic009G000700 Sobic009G000700 Sobic001G293600--Sobic009G000700 Sobic004G261100 Sobic004G261100 Sobic001G293600--Sobic004G261100 Sobic001G286000 Sobic001G286000 Sobic001G293600--Sobic001G286000 Sobic010G088950--Sobic006G166300 Sobic010G088950--Sobic001G293600 Sobic008G127200 Sobic008G127200 Sobic010G088950--Sobic008G127200 Sobic002G043700 Sobic002G043700 Sobic010G088950--Sobic002G043700 Sobic003G231900 Sobic003G231900 Sobic010G088950--Sobic003G231900 Sobic010G088950--Sobic010G236700 Sobic007G017900 Sobic007G017900 Sobic010G088950--Sobic007G017900 Sobic010G022300 Sobic010G022300 Sobic010G088950--Sobic010G022300 Sobic003G022800 Sobic003G022800 Sobic010G088950--Sobic003G022800 Sobic003G198100--Sobic006G166300 Sobic003G198100--Sobic010G236700 Sobic003G233100 Sobic003G233100 Sobic003G198100--Sobic003G233100 Sobic003G198100--Sobic001G293600 Sobic002G210100 Sobic002G210100 Sobic003G198100--Sobic002G210100 Sobic001G396300 Sobic001G396300 Sobic003G198100--Sobic001G396300 Sobic006G228400 Sobic006G228400 Sobic003G198100--Sobic006G228400 Sobic001G252800 Sobic001G252800 Sobic003G198100--Sobic001G252800 Sobic003G198100--Sobic010G088950 Sobic010G236700--Sobic003G198100 Sobic010G236700--Sobic006G166300 Sobic010G236700--Sobic001G293600 Sobic010G236700--Sobic010G088950 Sobic006G182800 Sobic006G182800 Sobic010G236700--Sobic006G182800 Sobic001G159850 Sobic001G159850 Sobic010G236700--Sobic001G159850 Sobic002G189000 Sobic002G189000 Sobic002G271100--Sobic002G189000 Sobic006G267900 Sobic006G267900 Sobic002G271100--Sobic006G267900 Sobic003G373150 Sobic003G373150 Sobic002G271100--Sobic003G373150 Sobic003G225900 Sobic003G225900 Sobic002G271100--Sobic003G225900 Sobic004G155150 Sobic004G155150 Sobic002G271100--Sobic004G155150 Sobic002G013900 Sobic002G013900 Sobic002G271100--Sobic002G013900 Sobic003G233900 Sobic003G233900 Sobic002G271100--Sobic003G233900 Sobic010G260300 Sobic010G260300 Sobic002G271100--Sobic010G260300 Sobic002G271100--Sobic009G000700 Sobic003G423100 Sobic003G423100 Sobic006G166300--Sobic003G423100 Sobic003G178200 Sobic003G178200 Sobic006G166300--Sobic003G178200 Sobic003G245700 Sobic003G245700 Sobic006G166300--Sobic003G245700 Sobic007G072901 Sobic007G072901 Sobic006G166300--Sobic007G072901 Sobic002G037000 Sobic002G037000 Sobic006G166300--Sobic002G037000 Sobic005G037500 Sobic005G037500 Sobic006G166300--Sobic005G037500 Sobic007G210400 Sobic007G210400 Sobic006G166300--Sobic007G210400 Sobic006G090201 Sobic006G090201 Sobic006G166300--Sobic006G090201 Sobic005G189400 Sobic005G189400 Sobic006G166300--Sobic005G189400 Sobic010G220400--Sobic009G000700 Sobic010G220400--Sobic001G159850 Sobic004G310600 Sobic004G310600 Sobic009G000700--Sobic004G310600 Sobic003G078501 Sobic003G078501 Sobic009G000700--Sobic003G078501 Sobic009G000700--Sobic004G155150 Sobic010G006700 Sobic010G006700 Sobic009G000700--Sobic010G006700 Sobic004G331300 Sobic004G331300 Sobic009G000700--Sobic004G331300 Sobic009G000700--Sobic003G233900 Sobic009G000700--Sobic003G373150 Sobic009G000700--Sobic006G267900 Sobic001G125100 Sobic001G125100 Sobic009G000700--Sobic001G125100 Sobic004G261100--Sobic001G293600 Sobic008G092400 Sobic008G092400 Sobic004G261100--Sobic008G092400 Sobic003G304100 Sobic003G304100 Sobic004G261100--Sobic003G304100 Sobic003G033500 Sobic003G033500 Sobic004G261100--Sobic003G033500 Sobic004G155200 Sobic004G155200 Sobic004G261100--Sobic004G155200 Sobic003G367350 Sobic003G367350 Sobic004G261100--Sobic003G367350 Sobic007G217300 Sobic007G217300 Sobic004G261100--Sobic007G217300 Sobic004G261100--Sobic010G236700 Sobic001G502700 Sobic001G502700 Sobic004G261100--Sobic001G502700 Sobic001G286000--Sobic009G000700 Sobic001G286000--Sobic004G310600 Sobic001G286000--Sobic004G155150 Sobic007G051600 Sobic007G051600 Sobic001G286000--Sobic007G051600 Sobic009G201500 Sobic009G201500 Sobic001G286000--Sobic009G201500 Sobic001G286000--Sobic006G267900 Sobic001G286000--Sobic001G125100 Sobic001G286000--Sobic003G078501 Sobic001G286000--Sobic010G220400
Octagon: transcription factors


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