Gene annotation
Transcriptome id Sobic.008G066000.1
Synonym Sb08g005490
Functional annotation cyclin-dependent kinase G-2, putative, expressed
UniProt C5YTB9
Pfam PF07714
Panther DB PTHR24056 PTHR24056:SF186
NCBI CDD KOG0594; Protein kinase PCTAIRE and related kinases KOG0659Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7
KEGG Orthology K08818; cell division cycle 2-like
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G67580 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os12g23700.1 : cyclin-dependent kinase G-2, putative, expressed
MaizeGDB (Corn) Zm00025a025690
Brachypodium KQJ86841
Barley HORVU1Hr1G080160.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G175900 RING-H2 finger protein ATL2B, putative, expressed -
2 Sobic.004G084100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
5 Sobic.003G373000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
7 Sobic.001G290400 no apical meristem protein, putative, expressed -
8 Sobic.007G212200 AN1-like zinc finger domain containing protein, expressed -
9 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
10 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
11 Sobic.007G101800 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed -
12 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.006G194100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
15 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G053200 Cupin domain containing protein, expressed -
17 Sobic.002G344700 remorin, putative, expressed -
18 Sobic.003G150400 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed -
19 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.001G489600 expressed protein -


Gene co-expression network
sample Sobic008G066000 Sobic008G066000 Sobic007G175900 Sobic007G175900 Sobic008G066000--Sobic007G175900 Sobic004G084100 Sobic004G084100 Sobic008G066000--Sobic004G084100 Sobic010G076600 Sobic010G076600 Sobic008G066000--Sobic010G076600 Sobic006G095600 Sobic006G095600 Sobic008G066000--Sobic006G095600 Sobic003G373000 Sobic003G373000 Sobic008G066000--Sobic003G373000 Sobic003G353800 Sobic003G353800 Sobic008G066000--Sobic003G353800 Sobic001G290400 Sobic001G290400 Sobic008G066000--Sobic001G290400 Sobic007G212200 Sobic007G212200 Sobic008G066000--Sobic007G212200 Sobic009G071800 Sobic009G071800 Sobic008G066000--Sobic009G071800 Sobic006G210300 Sobic006G210300 Sobic007G175900--Sobic006G210300 Sobic004G244100 Sobic004G244100 Sobic007G175900--Sobic004G244100 Sobic003G268900 Sobic003G268900 Sobic007G175900--Sobic003G268900 Sobic007G175900--Sobic008G066000 Sobic002G197600 Sobic002G197600 Sobic007G175900--Sobic002G197600 Sobic001G482700 Sobic001G482700 Sobic007G175900--Sobic001G482700 Sobic008G036000 Sobic008G036000 Sobic007G175900--Sobic008G036000 Sobic002G021300 Sobic002G021300 Sobic007G175900--Sobic002G021300 Sobic010G233400 Sobic010G233400 Sobic007G175900--Sobic010G233400 Sobic004G084100--Sobic006G095600 Sobic003G158600 Sobic003G158600 Sobic004G084100--Sobic003G158600 Sobic004G084100--Sobic008G036000 Sobic007G077001 Sobic007G077001 Sobic004G084100--Sobic007G077001 Sobic001G489600 Sobic001G489600 Sobic004G084100--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic004G084100--Sobic002G203000 Sobic001G077700 Sobic001G077700 Sobic004G084100--Sobic001G077700 Sobic004G084100--Sobic009G071800 Sobic004G084100--Sobic010G076600 Sobic006G184400 Sobic006G184400 Sobic010G076600--Sobic006G184400 Sobic001G209800 Sobic001G209800 Sobic010G076600--Sobic001G209800 Sobic001G476400 Sobic001G476400 Sobic010G076600--Sobic001G476400 Sobic001G473900 Sobic001G473900 Sobic010G076600--Sobic001G473900 Sobic009G217600 Sobic009G217600 Sobic010G076600--Sobic009G217600 Sobic003G338900 Sobic003G338900 Sobic010G076600--Sobic003G338900 Sobic010G076600--Sobic008G036000 Sobic010G076600--Sobic006G095600 Sobic003G296700 Sobic003G296700 Sobic010G076600--Sobic003G296700 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic001G051600 Sobic001G051600 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic006G095600--Sobic004G084100 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400 Sobic010G200700 Sobic010G200700 Sobic003G373000--Sobic010G200700 Sobic003G012800 Sobic003G012800 Sobic003G373000--Sobic003G012800 Sobic002G036100 Sobic002G036100 Sobic003G373000--Sobic002G036100 Sobic004G286600 Sobic004G286600 Sobic003G373000--Sobic004G286600 Sobic010G245800 Sobic010G245800 Sobic003G373000--Sobic010G245800 Sobic006G089300 Sobic006G089300 Sobic003G373000--Sobic006G089300 Sobic009G066800 Sobic009G066800 Sobic003G373000--Sobic009G066800 Sobic001G513700 Sobic001G513700 Sobic003G373000--Sobic001G513700 Sobic001G077400 Sobic001G077400 Sobic003G373000--Sobic001G077400 Sobic003G353800--Sobic009G217600 Sobic001G341600 Sobic001G341600 Sobic003G353800--Sobic001G341600 Sobic001G441100 Sobic001G441100 Sobic003G353800--Sobic001G441100 Sobic001G035000 Sobic001G035000 Sobic003G353800--Sobic001G035000 Sobic002G278500 Sobic002G278500 Sobic003G353800--Sobic002G278500 Sobic003G353800--Sobic001G077400 Sobic009G217500 Sobic009G217500 Sobic003G353800--Sobic009G217500 Sobic008G042900 Sobic008G042900 Sobic003G353800--Sobic008G042900 Sobic003G416500 Sobic003G416500 Sobic003G353800--Sobic003G416500 Sobic002G118600 Sobic002G118600 Sobic001G290400--Sobic002G118600 Sobic002G294700 Sobic002G294700 Sobic001G290400--Sobic002G294700 Sobic001G051800 Sobic001G051800 Sobic001G290400--Sobic001G051800 Sobic004G053200 Sobic004G053200 Sobic001G290400--Sobic004G053200 Sobic001G290400--Sobic003G338900 Sobic001G290400--Sobic001G473900 Sobic010G228000 Sobic010G228000 Sobic001G290400--Sobic010G228000 Sobic005G139700 Sobic005G139700 Sobic001G290400--Sobic005G139700 Sobic001G538866 Sobic001G538866 Sobic001G290400--Sobic001G538866 Sobic002G354900 Sobic002G354900 Sobic007G212200--Sobic002G354900 Sobic007G011000 Sobic007G011000 Sobic007G212200--Sobic007G011000 Sobic009G204100 Sobic009G204100 Sobic007G212200--Sobic009G204100 Sobic007G212200--Sobic002G118600 Sobic002G245800 Sobic002G245800 Sobic007G212200--Sobic002G245800 Sobic001G410100 Sobic001G410100 Sobic007G212200--Sobic001G410100 Sobic003G361100 Sobic003G361100 Sobic007G212200--Sobic003G361100 Sobic007G212200--Sobic006G089300 Sobic007G212200--Sobic003G353800 Sobic009G071800--Sobic001G077700 Sobic009G071800--Sobic002G203000 Sobic010G234600 Sobic010G234600 Sobic009G071800--Sobic010G234600 Sobic002G248100 Sobic002G248100 Sobic009G071800--Sobic002G248100 Sobic009G071800--Sobic002G294700 Sobic010G076700 Sobic010G076700 Sobic009G071800--Sobic010G076700 Sobic001G398500 Sobic001G398500 Sobic009G071800--Sobic001G398500 Sobic009G071800--Sobic001G473900 Sobic009G071800--Sobic006G095600
Octagon: transcription factors


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