Gene annotation
Transcriptome id Sobic.007G175900.3,Sobic.007G175900.2,Sobic.007G175900.1
Synonym NIP2, Sb07g024770
Functional annotation RING-H2 finger protein ATL2B, putative, expressed
UniProt C5YH18 , A0A1Z5RAG0 , A0A1Z5RAZ3
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G17730 : NEP-interacting protein 2
RAP-DB (Rice) LOC_Os08g43670.1 : RING-H2 finger protein ATL2B, putative, expressed
MaizeGDB (Corn) Zm00025a034239 , Zm00025a031271 , Zm00025a005671
Brachypodium PNT75317 , KQK16719
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
2 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.003G268900 STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
4 Sobic.008G066000 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
5 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
6 Sobic.001G482700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
7 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
8 Sobic.002G021300 bZIP transcription factor domain containing protein, expressed -
9 Sobic.010G233400 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dihydroflavonol-4-reductase, putative, expressed -
10 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
11 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
12 Sobic.008G059000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
13 Sobic.009G167000 expressed protein -
14 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
16 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
17 Sobic.004G084100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.009G076500 expressed protein -
19 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
20 Sobic.004G176900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.9 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -


Gene co-expression network
sample Sobic007G175900 Sobic007G175900 Sobic006G210300 Sobic006G210300 Sobic007G175900--Sobic006G210300 Sobic004G244100 Sobic004G244100 Sobic007G175900--Sobic004G244100 Sobic003G268900 Sobic003G268900 Sobic007G175900--Sobic003G268900 Sobic008G066000 Sobic008G066000 Sobic007G175900--Sobic008G066000 Sobic002G197600 Sobic002G197600 Sobic007G175900--Sobic002G197600 Sobic001G482700 Sobic001G482700 Sobic007G175900--Sobic001G482700 Sobic008G036000 Sobic008G036000 Sobic007G175900--Sobic008G036000 Sobic002G021300 Sobic002G021300 Sobic007G175900--Sobic002G021300 Sobic010G233400 Sobic010G233400 Sobic007G175900--Sobic010G233400 Sobic002G217100 Sobic002G217100 Sobic006G210300--Sobic002G217100 Sobic004G281200 Sobic004G281200 Sobic006G210300--Sobic004G281200 Sobic001G081600 Sobic001G081600 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic001G462800 Sobic001G462800 Sobic006G210300--Sobic001G462800 Sobic002G367900 Sobic002G367900 Sobic006G210300--Sobic002G367900 Sobic010G016500 Sobic010G016500 Sobic006G210300--Sobic010G016500 Sobic006G210300--Sobic004G244100 Sobic006G184400 Sobic006G184400 Sobic006G210300--Sobic006G184400 Sobic004G244100--Sobic003G268900 Sobic006G194600 Sobic006G194600 Sobic004G244100--Sobic006G194600 Sobic004G244300 Sobic004G244300 Sobic004G244100--Sobic004G244300 Sobic004G244100--Sobic004G281200 Sobic009G167000 Sobic009G167000 Sobic004G244100--Sobic009G167000 Sobic004G244100--Sobic010G016500 Sobic004G244100--Sobic002G217100 Sobic006G203000 Sobic006G203000 Sobic004G244100--Sobic006G203000 Sobic006G026400 Sobic006G026400 Sobic004G244100--Sobic006G026400 Sobic003G268900--Sobic004G244100 Sobic001G095700 Sobic001G095700 Sobic003G268900--Sobic001G095700 Sobic003G268900--Sobic002G367900 Sobic003G268900--Sobic002G217100 Sobic003G268900--Sobic006G210300 Sobic003G268900--Sobic002G197600 Sobic003G268900--Sobic004G244300 Sobic003G268900--Sobic009G167000 Sobic003G268900--Sobic004G281200 Sobic008G066000--Sobic007G175900 Sobic004G084100 Sobic004G084100 Sobic008G066000--Sobic004G084100 Sobic010G076600 Sobic010G076600 Sobic008G066000--Sobic010G076600 Sobic006G095600 Sobic006G095600 Sobic008G066000--Sobic006G095600 Sobic003G373000 Sobic003G373000 Sobic008G066000--Sobic003G373000 Sobic003G353800 Sobic003G353800 Sobic008G066000--Sobic003G353800 Sobic001G290400 Sobic001G290400 Sobic008G066000--Sobic001G290400 Sobic007G212200 Sobic007G212200 Sobic008G066000--Sobic007G212200 Sobic009G071800 Sobic009G071800 Sobic008G066000--Sobic009G071800 Sobic002G197600--Sobic001G081600 Sobic002G197600--Sobic002G217100 Sobic002G197600--Sobic001G462800 Sobic002G197600--Sobic004G281200 Sobic002G197600--Sobic006G210300 Sobic002G197600--Sobic002G367900 Sobic002G197600--Sobic008G036000 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900 Sobic004G051166 Sobic004G051166 Sobic001G482700--Sobic004G051166 Sobic001G482700--Sobic002G021300 Sobic004G268700 Sobic004G268700 Sobic001G482700--Sobic004G268700 Sobic001G482700--Sobic008G036000 Sobic001G482700--Sobic001G290400 Sobic001G403600 Sobic001G403600 Sobic001G482700--Sobic001G403600 Sobic001G482700--Sobic001G081600 Sobic002G344700 Sobic002G344700 Sobic001G482700--Sobic002G344700 Sobic001G482700--Sobic002G197600 Sobic008G036000--Sobic002G197600 Sobic001G209800 Sobic001G209800 Sobic008G036000--Sobic001G209800 Sobic003G268700 Sobic003G268700 Sobic008G036000--Sobic003G268700 Sobic008G036000--Sobic010G076600 Sobic003G158600 Sobic003G158600 Sobic008G036000--Sobic003G158600 Sobic008G036000--Sobic001G462800 Sobic001G077400 Sobic001G077400 Sobic008G036000--Sobic001G077400 Sobic008G036000--Sobic004G084100 Sobic002G036100 Sobic002G036100 Sobic008G036000--Sobic002G036100 Sobic002G021300--Sobic009G167000 Sobic004G300300 Sobic004G300300 Sobic002G021300--Sobic004G300300 Sobic002G021300--Sobic004G281200 Sobic009G076500 Sobic009G076500 Sobic002G021300--Sobic009G076500 Sobic008G059000 Sobic008G059000 Sobic002G021300--Sobic008G059000 Sobic002G037400 Sobic002G037400 Sobic002G021300--Sobic002G037400 Sobic002G021300--Sobic006G026400 Sobic002G021300--Sobic006G194600 Sobic002G021300--Sobic004G244100 Sobic001G157400 Sobic001G157400 Sobic010G233400--Sobic001G157400 Sobic001G050800 Sobic001G050800 Sobic010G233400--Sobic001G050800 Sobic001G075800 Sobic001G075800 Sobic010G233400--Sobic001G075800 Sobic003G131500 Sobic003G131500 Sobic010G233400--Sobic003G131500 Sobic010G233400--Sobic002G197600 Sobic009G037800 Sobic009G037800 Sobic010G233400--Sobic009G037800 Sobic010G233400--Sobic004G244100 Sobic009G170100 Sobic009G170100 Sobic010G233400--Sobic009G170100 Sobic003G087100 Sobic003G087100 Sobic010G233400--Sobic003G087100
Octagon: transcription factors


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