Gene annotation
| Transcriptome id | Sobic.006G184400.1 |
|---|---|
| Synonym | Sb06g025870 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) MATE efflux family protein, putative, expressed |
| UniProt | C5YE45 |
| Pfam | PF01554 |
| Panther DB | PTHR11206 PTHR11206:SF172 |
| NCBI CDD | KOG1347; Uncharacterized membrane protein, predicted efflux pump |
| KEGG Orthology | K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| Gene Ontology | GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport |
Orthologs (automatic annotation)
| TAIR | AT4G29140 : MATE efflux family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g48290.1 : MATE efflux family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a056760 , Zm00025a010158 , Zm00025a003086 , Zm00025a021500 |
| Brachypodium | PNT77806 , PNT77807 , KQJ84119 , KQK17997 , KQK00755 , KQK22742 , KQK22741 |
| Barley | HORVU2Hr1G094870.1 , HORVU2Hr1G094870.2 , HORVU2Hr1G094870.3 , HORVU2Hr1G094870.4 , HORVU2Hr1G094870.5 , HORVU0Hr1G025760.4 , HORVU0Hr1G025760.5 , HORVU0Hr1G025760.2 , HORVU0Hr1G025760.3 , HORVU0Hr1G025760.1 , HORVU6Hr1G065390.1 , HORVU6Hr1G065390.3 , HORVU6Hr1G065390.2 , HORVU6Hr1G065390.5 , HORVU6Hr1G065390.4 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G305000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed | K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 |
| 2 | Sobic.010G076600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 3 | Sobic.002G217100 | tyrosine protein kinase domain containing protein, putative, expressed | - |
| 4 | Sobic.006G210300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 5 | Sobic.001G398500 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed | - |
| 6 | Sobic.001G192800 | AAA-type ATPase family protein, putative, expressed | - |
| 7 | Sobic.003G361100 | hs1, putative, expressed | - |
| 8 | Sobic.009G071800 | 6-phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 9 | Sobic.003G353800 | avr9/Cf-9 rapidly elicited protein, putative, expressed | - |
| 10 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 11 | Sobic.003G268700 | STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 12 | Sobic.001G209800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 13 | Sobic.001G035000 | ZOS3-22 - C2H2 zinc finger protein, expressed | - |
| 14 | Sobic.001G476400 | - | - |
| 15 | Sobic.003G150400 | Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed | - |
| 16 | Sobic.001G462800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | - |
| 17 | Sobic.004G283300 | AP2 domain containing protein, expressed | - |
| 18 | Sobic.010G016500 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed | - |
| 19 | Sobic.001G081600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | - |
| 20 | Sobic.002G344700 | remorin, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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