Gene annotation
Transcriptome id Sobic.001G286000.1
Synonym Sb01g028080
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt C5WQQ9
Pfam -
Panther DB PTHR26312 PTHR26312:SF53
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17940 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g42610.1 : expressed protein
MaizeGDB (Corn) Zm00025a003509
Brachypodium KQJ97960
Barley HORVU1Hr1G050780.1 , HORVU1Hr1G050780.2
Wheat TraesCS1B02G209200 , TraesCS1A02G194200
Populus -


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cDNA sequences
Sobic.001G286000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
2 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
3 Sobic.004G155150 - -
4 Sobic.007G051600 - -
5 Sobic.009G201500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSP101 Heat shock protein 101("PubMedID : 26759170,PubMedID : 24597475")@heat shock protein 101, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
6 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
7 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
8 Sobic.003G078501 - -
9 Sobic.010G220400 -(PubMedID : 23108465)@OsFBX202 - F-box domain containing protein, expressed -
10 Sobic.003G373150 - -
11 Sobic.004G257350 - -
12 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
13 Sobic.004G331300 AP2 domain containing protein, expressed -
14 Sobic.001G159850 - -
15 Sobic.001G159850 - -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.001G159850 - -
19 Sobic.001G159850 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic001G286000 Sobic001G286000 Sobic009G000700 Sobic009G000700 Sobic001G286000--Sobic009G000700 Sobic004G310600 Sobic004G310600 Sobic001G286000--Sobic004G310600 Sobic004G155150 Sobic004G155150 Sobic001G286000--Sobic004G155150 Sobic007G051600 Sobic007G051600 Sobic001G286000--Sobic007G051600 Sobic009G201500 Sobic009G201500 Sobic001G286000--Sobic009G201500 Sobic006G267900 Sobic006G267900 Sobic001G286000--Sobic006G267900 Sobic001G125100 Sobic001G125100 Sobic001G286000--Sobic001G125100 Sobic003G078501 Sobic003G078501 Sobic001G286000--Sobic003G078501 Sobic010G220400 Sobic010G220400 Sobic001G286000--Sobic010G220400 Sobic009G000700--Sobic004G310600 Sobic009G000700--Sobic003G078501 Sobic009G000700--Sobic004G155150 Sobic010G006700 Sobic010G006700 Sobic009G000700--Sobic010G006700 Sobic004G331300 Sobic004G331300 Sobic009G000700--Sobic004G331300 Sobic003G233900 Sobic003G233900 Sobic009G000700--Sobic003G233900 Sobic003G373150 Sobic003G373150 Sobic009G000700--Sobic003G373150 Sobic009G000700--Sobic006G267900 Sobic009G000700--Sobic001G125100 Sobic004G310600--Sobic009G000700 Sobic004G310600--Sobic003G078501 Sobic004G310600--Sobic010G006700 Sobic004G310600--Sobic003G373150 Sobic004G310600--Sobic004G155150 Sobic004G310600--Sobic004G331300 Sobic004G310600--Sobic003G233900 Sobic004G257350 Sobic004G257350 Sobic004G310600--Sobic004G257350 Sobic004G310600--Sobic006G267900 Sobic004G155150--Sobic009G000700 Sobic004G155150--Sobic004G310600 Sobic004G155150--Sobic003G078501 Sobic004G155150--Sobic003G233900 Sobic004G155150--Sobic006G267900 Sobic004G155150--Sobic010G006700 Sobic004G155150--Sobic004G257350 Sobic004G155150--Sobic003G373150 Sobic004G155150--Sobic001G125100 Sobic007G051600--Sobic004G331300 Sobic007G051600--Sobic009G000700 Sobic007G051600--Sobic004G310600 Sobic001G159850 Sobic001G159850 Sobic007G051600--Sobic001G159850 Sobic006G005600 Sobic006G005600 Sobic009G201500--Sobic006G005600 Sobic001G092600 Sobic001G092600 Sobic009G201500--Sobic001G092600 Sobic006G055600 Sobic006G055600 Sobic009G201500--Sobic006G055600 Sobic004G283201 Sobic004G283201 Sobic009G201500--Sobic004G283201 Sobic009G201500--Sobic001G286000 Sobic009G201500--Sobic003G373150 Sobic004G321000 Sobic004G321000 Sobic009G201500--Sobic004G321000 Sobic009G201500--Sobic003G233900 Sobic004G283300 Sobic004G283300 Sobic009G201500--Sobic004G283300 Sobic006G267900--Sobic009G000700 Sobic006G267900--Sobic010G006700 Sobic006G267900--Sobic004G310600 Sobic006G267900--Sobic003G078501 Sobic006G267900--Sobic001G125100 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic006G267900--Sobic004G331300 Sobic001G125100--Sobic003G078501 Sobic001G125100--Sobic010G006700 Sobic001G125100--Sobic003G373150 Sobic001G125100--Sobic001G159850 Sobic003G078501--Sobic004G310600 Sobic003G078501--Sobic009G000700 Sobic003G078501--Sobic010G006700 Sobic003G078501--Sobic001G125100 Sobic003G078501--Sobic001G159850 Sobic010G220400--Sobic009G000700 Sobic010G220400--Sobic001G159850
Octagon: transcription factors


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