Gene annotation
Transcriptome id Sobic.009G195800.1,Sobic.009G195800.3,Sobic.009G195800.2
Synonym SbCIPK13, SnRK3.9, Sb09g025420, ATWL4, CBL-interacting protein kinases, WL4, CIPK12
Functional annotation Interacting factor of CBLs (PubMedID : 19860013)
CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C4P7U5
Pfam PF14531 PF03822
Panther DB PTHR24347 PTHR24347:SF168
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology K07198; PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT1G29230 : CBL-interacting protein kinase 18
RAP-DB (Rice) LOC_Os05g43840.1 : CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a028374 , Zm00025a044217 , Zm00025a031165 , Zm00025a010681 , Zm00025a035878 , Zm00025a027493 , Zm00025a037946 , Zm00025a017143
Brachypodium KQK05416 , PNT64583 , PNT64582 , KQJ90256 , KQJ90254 , KQJ90255
Barley HORVU4Hr1G021090.1 , HORVU4Hr1G021090.2 , HORVU6Hr1G054210.1 , HORVU6Hr1G054210.2 , HORVU6Hr1G054210.3 , HORVU1Hr1G076910.4 , HORVU1Hr1G076910.5 , HORVU1Hr1G076910.6 , HORVU1Hr1G076910.1 , HORVU1Hr1G076910.2 , HORVU1Hr1G076910.3 , HORVU3Hr1G073100.4 , HORVU3Hr1G073100.2 , HORVU3Hr1G073100.3 , HORVU5Hr1G065370.1 , HORVU5Hr1G065370.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G066900 expressed protein -
2 Sobic.003G233900 - -
3 Sobic.004G283201 - -
4 Sobic.003G373150 - -
5 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
6 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
7 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
9 Sobic.004G283300 AP2 domain containing protein, expressed -
10 Sobic.003G078501 - -
11 Sobic.007G140900 similar to Putative uncharacterized protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
12 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
13 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
14 Sobic.001G430700 expressed protein -
15 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
16 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
17 Sobic.004G155150 - -
18 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
19 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
20 Sobic.004G257350 - -


Gene co-expression network
sample Sobic009G195800 Sobic009G195800 Sobic003G066900 Sobic003G066900 Sobic009G195800--Sobic003G066900 Sobic003G233900 Sobic003G233900 Sobic009G195800--Sobic003G233900 Sobic004G283201 Sobic004G283201 Sobic009G195800--Sobic004G283201 Sobic003G373150 Sobic003G373150 Sobic009G195800--Sobic003G373150 Sobic006G267900 Sobic006G267900 Sobic009G195800--Sobic006G267900 Sobic004G285100 Sobic004G285100 Sobic009G195800--Sobic004G285100 Sobic010G260300 Sobic010G260300 Sobic009G195800--Sobic010G260300 Sobic002G189000 Sobic002G189000 Sobic009G195800--Sobic002G189000 Sobic004G283300 Sobic004G283300 Sobic009G195800--Sobic004G283300 Sobic003G066900--Sobic003G233900 Sobic008G044750 Sobic008G044750 Sobic003G066900--Sobic008G044750 Sobic009G128300 Sobic009G128300 Sobic003G066900--Sobic009G128300 Sobic009G000700 Sobic009G000700 Sobic003G066900--Sobic009G000700 Sobic004G310600 Sobic004G310600 Sobic003G066900--Sobic004G310600 Sobic003G066900--Sobic004G285100 Sobic001G509400 Sobic001G509400 Sobic003G066900--Sobic001G509400 Sobic004G155150 Sobic004G155150 Sobic003G066900--Sobic004G155150 Sobic004G257350 Sobic004G257350 Sobic003G066900--Sobic004G257350 Sobic003G233900--Sobic009G128300 Sobic003G227600 Sobic003G227600 Sobic003G233900--Sobic003G227600 Sobic002G182800 Sobic002G182800 Sobic003G233900--Sobic002G182800 Sobic003G040800 Sobic003G040800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic009G216900 Sobic009G216900 Sobic003G233900--Sobic009G216900 Sobic003G233900--Sobic004G257350 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic006G055600 Sobic006G055600 Sobic004G283201--Sobic006G055600 Sobic006G005600 Sobic006G005600 Sobic004G283201--Sobic006G005600 Sobic004G283201--Sobic003G373150 Sobic006G184800 Sobic006G184800 Sobic004G283201--Sobic006G184800 Sobic001G092600 Sobic001G092600 Sobic004G283201--Sobic001G092600 Sobic004G283201--Sobic004G283300 Sobic010G016500 Sobic010G016500 Sobic004G283201--Sobic010G016500 Sobic001G125100 Sobic001G125100 Sobic004G283201--Sobic001G125100 Sobic009G201500 Sobic009G201500 Sobic004G283201--Sobic009G201500 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic003G373150--Sobic009G000700 Sobic010G006700 Sobic010G006700 Sobic003G373150--Sobic010G006700 Sobic003G373150--Sobic004G283201 Sobic003G078501 Sobic003G078501 Sobic003G373150--Sobic003G078501 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic004G278200 Sobic004G278200 Sobic003G373150--Sobic004G278200 Sobic006G267900--Sobic009G000700 Sobic006G267900--Sobic010G006700 Sobic006G267900--Sobic004G310600 Sobic006G267900--Sobic003G078501 Sobic006G267900--Sobic001G125100 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic004G331300 Sobic004G331300 Sobic006G267900--Sobic004G331300 Sobic004G285100--Sobic003G233900 Sobic004G285100--Sobic003G040800 Sobic004G285100--Sobic004G310600 Sobic004G285100--Sobic009G000700 Sobic001G106000 Sobic001G106000 Sobic004G285100--Sobic001G106000 Sobic005G087800 Sobic005G087800 Sobic004G285100--Sobic005G087800 Sobic004G285100--Sobic009G128300 Sobic004G285100--Sobic003G227600 Sobic004G285100--Sobic004G155150 Sobic010G260300--Sobic002G189000 Sobic003G229000 Sobic003G229000 Sobic010G260300--Sobic003G229000 Sobic009G183000 Sobic009G183000 Sobic010G260300--Sobic009G183000 Sobic007G025800 Sobic007G025800 Sobic010G260300--Sobic007G025800 Sobic002G271100 Sobic002G271100 Sobic010G260300--Sobic002G271100 Sobic003G225900 Sobic003G225900 Sobic010G260300--Sobic003G225900 Sobic010G260300--Sobic004G155150 Sobic010G260300--Sobic003G233900 Sobic003G198150 Sobic003G198150 Sobic010G260300--Sobic003G198150 Sobic002G013900 Sobic002G013900 Sobic002G189000--Sobic002G013900 Sobic002G189000--Sobic003G233900 Sobic002G189000--Sobic002G271100 Sobic002G189000--Sobic010G260300 Sobic002G189000--Sobic009G128300 Sobic002G110200 Sobic002G110200 Sobic002G189000--Sobic002G110200 Sobic002G189000--Sobic003G225900 Sobic002G189000--Sobic004G155150 Sobic002G189000--Sobic004G285100 Sobic002G344700 Sobic002G344700 Sobic004G283300--Sobic002G344700 Sobic004G283300--Sobic010G016500 Sobic001G081600 Sobic001G081600 Sobic004G283300--Sobic001G081600 Sobic004G283300--Sobic004G283201 Sobic009G170100 Sobic009G170100 Sobic004G283300--Sobic009G170100 Sobic006G032200 Sobic006G032200 Sobic004G283300--Sobic006G032200 Sobic004G281200 Sobic004G281200 Sobic004G283300--Sobic004G281200 Sobic001G476400 Sobic001G476400 Sobic004G283300--Sobic001G476400 Sobic006G210300 Sobic006G210300 Sobic004G283300--Sobic006G210300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.