Gene annotation
Transcriptome id Sobic.003G141800.1
Synonym Sb03g012280
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
polygalacturonase, putative, expressed
UniProt C5XI35
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT1G02460 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g19170.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a024257 , Zm00025a018841 , Zm00025a036031 , Zm00025a024414 , Zm00025a044423
Brachypodium KQK05109 , KQK04059 , KQK04217
Barley HORVU1Hr1G079170.39 , HORVU1Hr1G079170.35 , HORVU1Hr1G079170.34 , HORVU1Hr1G079170.37 , HORVU1Hr1G079170.36 , HORVU1Hr1G079170.31 , HORVU1Hr1G079170.30 , HORVU1Hr1G079170.33 , HORVU1Hr1G079170.32 , HORVU1Hr1G079170.44 , HORVU1Hr1G079170.28 , HORVU1Hr1G079170.29 , HORVU1Hr1G067840.5 , HORVU1Hr1G079170.22 , HORVU1Hr1G079170.23 , HORVU1Hr1G079170.20 , HORVU1Hr1G079170.21 , HORVU1Hr1G079170.26 , HORVU1Hr1G079170.27 , HORVU1Hr1G079170.24 , HORVU1Hr1G079170.25 , HORVU1Hr1G067840.7 , HORVU1Hr1G067840.1 , HORVU1Hr1G067840.2 , HORVU1Hr1G067840.3 , HORVU1Hr1G079170.53 , HORVU1Hr1G079170.52 , HORVU1Hr1G079170.51 , HORVU1Hr1G079170.50 , HORVU1Hr1G079170.48 , HORVU1Hr1G079170.49 , HORVU1Hr1G067840.4 , HORVU1Hr1G079170.45 , HORVU1Hr1G079170.46 , HORVU1Hr1G079170.47 , HORVU1Hr1G079170.40 , HORVU1Hr1G079170.41 , HORVU1Hr1G079170.42 , HORVU1Hr1G079170.43 , HORVU1Hr1G067840.6
Wheat TraesCS1B02G382300 , TraesCS1D02G370300 , TraesCS1D02G370300 , TraesCS1D02G370300 , TraesCS1D02G370300 , TraesCS1D02G370300 , TraesCSU02G113500 , TraesCS6B02G118000 , TraesCS6B02G118000 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS1A02G311100 , TraesCS1B02G322500 , TraesCS1D02G311000
Populus -


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cDNA sequences
Sobic.003G141800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
2 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
3 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
4 Sobic.004G283300 AP2 domain containing protein, expressed -
5 Sobic.003G373150 - -
6 Sobic.003G233900 - -
7 Sobic.001G430700 expressed protein -
8 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
9 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
10 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
11 Sobic.003G225900 expressed protein -
12 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
13 Sobic.010G265600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein of unknown function (DUF581)(PubMedID : 28640841)@DUF581 domain containing protein, expressed -
14 Sobic.003G040800 WRKY102, expressed -
15 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
16 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
17 Sobic.007G166900 auxin-induced protein 5NG4, putative, expressed -
18 Sobic.009G128300 CUE domain containing protein, expressed -
19 Sobic.004G283201 - -
20 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic003G141800 Sobic003G141800 Sobic006G267900 Sobic006G267900 Sobic003G141800--Sobic006G267900 Sobic010G071700 Sobic010G071700 Sobic003G141800--Sobic010G071700 Sobic002G189000 Sobic002G189000 Sobic003G141800--Sobic002G189000 Sobic004G283300 Sobic004G283300 Sobic003G141800--Sobic004G283300 Sobic003G373150 Sobic003G373150 Sobic003G141800--Sobic003G373150 Sobic003G233900 Sobic003G233900 Sobic003G141800--Sobic003G233900 Sobic001G430700 Sobic001G430700 Sobic003G141800--Sobic001G430700 Sobic004G285100 Sobic004G285100 Sobic003G141800--Sobic004G285100 Sobic006G032200 Sobic006G032200 Sobic003G141800--Sobic006G032200 Sobic009G000700 Sobic009G000700 Sobic006G267900--Sobic009G000700 Sobic010G006700 Sobic010G006700 Sobic006G267900--Sobic010G006700 Sobic004G310600 Sobic004G310600 Sobic006G267900--Sobic004G310600 Sobic003G078501 Sobic003G078501 Sobic006G267900--Sobic003G078501 Sobic001G125100 Sobic001G125100 Sobic006G267900--Sobic001G125100 Sobic004G155150 Sobic004G155150 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic004G331300 Sobic004G331300 Sobic006G267900--Sobic004G331300 Sobic003G342600 Sobic003G342600 Sobic010G071700--Sobic003G342600 Sobic010G071700--Sobic003G141800 Sobic001G063600 Sobic001G063600 Sobic010G071700--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic010G071700--Sobic009G170100 Sobic003G129400 Sobic003G129400 Sobic010G071700--Sobic003G129400 Sobic009G030200 Sobic009G030200 Sobic010G071700--Sobic009G030200 Sobic005G231700 Sobic005G231700 Sobic010G071700--Sobic005G231700 Sobic010G265600 Sobic010G265600 Sobic010G071700--Sobic010G265600 Sobic010G071700--Sobic006G032200 Sobic002G013900 Sobic002G013900 Sobic002G189000--Sobic002G013900 Sobic002G189000--Sobic003G233900 Sobic002G271100 Sobic002G271100 Sobic002G189000--Sobic002G271100 Sobic010G260300 Sobic010G260300 Sobic002G189000--Sobic010G260300 Sobic009G128300 Sobic009G128300 Sobic002G189000--Sobic009G128300 Sobic002G110200 Sobic002G110200 Sobic002G189000--Sobic002G110200 Sobic003G225900 Sobic003G225900 Sobic002G189000--Sobic003G225900 Sobic002G189000--Sobic004G155150 Sobic002G189000--Sobic004G285100 Sobic002G344700 Sobic002G344700 Sobic004G283300--Sobic002G344700 Sobic010G016500 Sobic010G016500 Sobic004G283300--Sobic010G016500 Sobic001G081600 Sobic001G081600 Sobic004G283300--Sobic001G081600 Sobic004G283201 Sobic004G283201 Sobic004G283300--Sobic004G283201 Sobic004G283300--Sobic009G170100 Sobic004G283300--Sobic006G032200 Sobic004G281200 Sobic004G281200 Sobic004G283300--Sobic004G281200 Sobic001G476400 Sobic001G476400 Sobic004G283300--Sobic001G476400 Sobic006G210300 Sobic006G210300 Sobic004G283300--Sobic006G210300 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic003G373150--Sobic004G283201 Sobic003G373150--Sobic003G078501 Sobic006G055600 Sobic006G055600 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic004G278200 Sobic004G278200 Sobic003G373150--Sobic004G278200 Sobic003G233900--Sobic009G128300 Sobic003G227600 Sobic003G227600 Sobic003G233900--Sobic003G227600 Sobic002G182800 Sobic002G182800 Sobic003G233900--Sobic002G182800 Sobic003G040800 Sobic003G040800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic009G216900 Sobic009G216900 Sobic003G233900--Sobic009G216900 Sobic004G257350 Sobic004G257350 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic001G450800 Sobic001G450800 Sobic001G430700--Sobic001G450800 Sobic003G361300 Sobic003G361300 Sobic001G430700--Sobic003G361300 Sobic001G106000 Sobic001G106000 Sobic001G430700--Sobic001G106000 Sobic001G430700--Sobic003G040800 Sobic001G430700--Sobic004G285100 Sobic001G430700--Sobic003G233900 Sobic002G267800 Sobic002G267800 Sobic001G430700--Sobic002G267800 Sobic001G430700--Sobic003G141800 Sobic001G430700--Sobic009G000700 Sobic004G285100--Sobic003G233900 Sobic004G285100--Sobic003G040800 Sobic004G285100--Sobic004G310600 Sobic004G285100--Sobic009G000700 Sobic004G285100--Sobic001G106000 Sobic005G087800 Sobic005G087800 Sobic004G285100--Sobic005G087800 Sobic004G285100--Sobic009G128300 Sobic004G285100--Sobic003G227600 Sobic004G285100--Sobic004G155150 Sobic006G032200--Sobic009G170100 Sobic006G032200--Sobic004G283300 Sobic002G037400 Sobic002G037400 Sobic006G032200--Sobic002G037400 Sobic006G203000 Sobic006G203000 Sobic006G032200--Sobic006G203000 Sobic006G032200--Sobic004G281200 Sobic006G032200--Sobic002G344700 Sobic006G032200--Sobic009G128300 Sobic001G075101 Sobic001G075101 Sobic006G032200--Sobic001G075101 Sobic006G032200--Sobic010G016500
Octagon: transcription factors


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