Gene annotation
Transcriptome id Sobic.010G071700.1
Synonym RAP2.12, Sb10g006260, SbERF102,ethylene response factor 102
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt C5Z5Y3
Pfam PF00847
Panther DB PTHR31190 PTHR31190:SF28
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G53910 : related to AP2 12
RAP-DB (Rice) LOC_Os06g09390.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022378 , Zm00025a049696
Brachypodium PNT78026
Barley HORVU6Hr1G082880.1
Wheat -
Populus -


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cDNA sequences
Sobic.010G071700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -
2 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
3 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
5 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
6 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
7 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
8 Sobic.010G265600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein of unknown function (DUF581)(PubMedID : 28640841)@DUF581 domain containing protein, expressed -
9 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
10 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
11 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
12 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
13 Sobic.004G283300 AP2 domain containing protein, expressed -
14 Sobic.004G053200 Cupin domain containing protein, expressed -
15 Sobic.003G188000 TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
16 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
17 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
18 Sobic.009G201500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSP101 Heat shock protein 101("PubMedID : 26759170,PubMedID : 24597475")@heat shock protein 101, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
19 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
20 Sobic.003G225900 expressed protein -


Gene co-expression network
sample Sobic010G071700 Sobic010G071700 Sobic003G342600 Sobic003G342600 Sobic010G071700--Sobic003G342600 Sobic003G141800 Sobic003G141800 Sobic010G071700--Sobic003G141800 Sobic001G063600 Sobic001G063600 Sobic010G071700--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic010G071700--Sobic009G170100 Sobic003G129400 Sobic003G129400 Sobic010G071700--Sobic003G129400 Sobic009G030200 Sobic009G030200 Sobic010G071700--Sobic009G030200 Sobic005G231700 Sobic005G231700 Sobic010G071700--Sobic005G231700 Sobic010G265600 Sobic010G265600 Sobic010G071700--Sobic010G265600 Sobic006G032200 Sobic006G032200 Sobic010G071700--Sobic006G032200 Sobic003G342600--Sobic009G170100 Sobic003G342600--Sobic010G071700 Sobic003G342600--Sobic006G032200 Sobic003G342600--Sobic001G063600 Sobic003G342600--Sobic003G129400 Sobic009G159900 Sobic009G159900 Sobic003G342600--Sobic009G159900 Sobic003G342600--Sobic009G030200 Sobic003G144200 Sobic003G144200 Sobic003G342600--Sobic003G144200 Sobic001G050800 Sobic001G050800 Sobic003G342600--Sobic001G050800 Sobic006G267900 Sobic006G267900 Sobic003G141800--Sobic006G267900 Sobic003G141800--Sobic010G071700 Sobic002G189000 Sobic002G189000 Sobic003G141800--Sobic002G189000 Sobic004G283300 Sobic004G283300 Sobic003G141800--Sobic004G283300 Sobic003G373150 Sobic003G373150 Sobic003G141800--Sobic003G373150 Sobic003G233900 Sobic003G233900 Sobic003G141800--Sobic003G233900 Sobic001G430700 Sobic001G430700 Sobic003G141800--Sobic001G430700 Sobic004G285100 Sobic004G285100 Sobic003G141800--Sobic004G285100 Sobic003G141800--Sobic006G032200 Sobic001G476400 Sobic001G476400 Sobic001G063600--Sobic001G476400 Sobic001G063600--Sobic005G231700 Sobic010G080400 Sobic010G080400 Sobic001G063600--Sobic010G080400 Sobic008G159100 Sobic008G159100 Sobic001G063600--Sobic008G159100 Sobic001G063600--Sobic009G170100 Sobic003G032900 Sobic003G032900 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic001G063600--Sobic004G283300 Sobic009G170100--Sobic006G032200 Sobic009G170100--Sobic004G283300 Sobic009G170100--Sobic001G050800 Sobic004G281200 Sobic004G281200 Sobic009G170100--Sobic004G281200 Sobic009G170100--Sobic001G081600 Sobic009G170100--Sobic001G063600 Sobic009G170100--Sobic003G342600 Sobic002G344700 Sobic002G344700 Sobic009G170100--Sobic002G344700 Sobic010G016500 Sobic010G016500 Sobic009G170100--Sobic010G016500 Sobic003G129400--Sobic003G342600 Sobic003G129400--Sobic010G071700 Sobic003G129400--Sobic001G063600 Sobic001G379000 Sobic001G379000 Sobic003G129400--Sobic001G379000 Sobic007G180300 Sobic007G180300 Sobic003G129400--Sobic007G180300 Sobic003G129400--Sobic009G030200 Sobic003G129400--Sobic005G231700 Sobic002G185300 Sobic002G185300 Sobic003G129400--Sobic002G185300 Sobic001G403600 Sobic001G403600 Sobic003G129400--Sobic001G403600 Sobic009G030200--Sobic001G050800 Sobic001G157400 Sobic001G157400 Sobic009G030200--Sobic001G157400 Sobic003G278700 Sobic003G278700 Sobic009G030200--Sobic003G278700 Sobic009G030200--Sobic010G071700 Sobic009G030200--Sobic005G231700 Sobic003G227600 Sobic003G227600 Sobic009G030200--Sobic003G227600 Sobic009G030200--Sobic003G342600 Sobic009G030200--Sobic009G159900 Sobic009G030200--Sobic006G032200 Sobic006G087900 Sobic006G087900 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic005G231700--Sobic002G325900 Sobic003G296700 Sobic003G296700 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic007G101800 Sobic007G101800 Sobic010G265600--Sobic007G101800 Sobic010G265600--Sobic009G170100 Sobic010G265600--Sobic003G141800 Sobic010G265600--Sobic004G283300 Sobic010G265600--Sobic006G032200 Sobic010G265600--Sobic001G081600 Sobic002G203000 Sobic002G203000 Sobic010G265600--Sobic002G203000 Sobic006G203000 Sobic006G203000 Sobic010G265600--Sobic006G203000 Sobic010G265600--Sobic010G071700 Sobic006G032200--Sobic009G170100 Sobic006G032200--Sobic004G283300 Sobic002G037400 Sobic002G037400 Sobic006G032200--Sobic002G037400 Sobic006G032200--Sobic006G203000 Sobic006G032200--Sobic004G281200 Sobic006G032200--Sobic002G344700 Sobic009G128300 Sobic009G128300 Sobic006G032200--Sobic009G128300 Sobic001G075101 Sobic001G075101 Sobic006G032200--Sobic001G075101 Sobic006G032200--Sobic010G016500
Octagon: transcription factors


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