Gene annotation
Transcriptome id Sobic.003G188000.1,Sobic.003G188000.2
Synonym Sb03g025280, CRK2
Functional annotation TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed
UniProt C5XN23 , A0A1B6Q482
Pfam PF01657 PF00069 PF01657 PF07714
Panther DB PTHR27002 PTHR27002:SF15
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G70520 : cysteine-rich RLK (RECEPTOR-like protein kinase) 2
RAP-DB (Rice) LOC_Os01g36790.1 : TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed
MaizeGDB (Corn) Zm00025a028786 , Zm00025a028787
Brachypodium -
Barley HORVU3Hr1G017420.3 , HORVU3Hr1G017420.2 , HORVU3Hr1G017420.1 , HORVU3Hr1G017420.7 , HORVU3Hr1G017420.6 , HORVU3Hr1G017420.4
Wheat TraesCS3A02G096500 , TraesCS3B02G112300 , TraesCS3B02G112300 , TraesCS3B02G112300 , TraesCS3D02G097000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G073000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsGrx_C15 - glutaredoxin subgroup III, expressed -
2 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
3 Sobic.001G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
4 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
5 Sobic.010G265600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein of unknown function (DUF581)(PubMedID : 28640841)@DUF581 domain containing protein, expressed -
6 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
7 Sobic.004G321000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
8 Sobic.003G293600 -(PubMedID : 34525227)@beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
9 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
10 Sobic.003G225900 expressed protein -
11 Sobic.003G373150 - -
12 Sobic.009G258300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
13 Sobic.004G278200 DUF581 domain containing protein, expressed -
14 Sobic.007G025800 amino acid transporter, putative, expressed -
15 Sobic.001G420100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
16 Sobic.001G103200 DNA binding protein, putative, expressed -
17 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
18 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
19 Sobic.001G092600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
20 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -


Gene co-expression network
sample Sobic003G188000 Sobic003G188000 Sobic009G073000 Sobic009G073000 Sobic003G188000--Sobic009G073000 Sobic010G071700 Sobic010G071700 Sobic003G188000--Sobic010G071700 Sobic001G243000 Sobic001G243000 Sobic003G188000--Sobic001G243000 Sobic006G267900 Sobic006G267900 Sobic003G188000--Sobic006G267900 Sobic010G265600 Sobic010G265600 Sobic003G188000--Sobic010G265600 Sobic003G141800 Sobic003G141800 Sobic003G188000--Sobic003G141800 Sobic004G321000 Sobic004G321000 Sobic003G188000--Sobic004G321000 Sobic003G293600 Sobic003G293600 Sobic003G188000--Sobic003G293600 Sobic002G203000 Sobic002G203000 Sobic003G188000--Sobic002G203000 Sobic006G087900 Sobic006G087900 Sobic009G073000--Sobic006G087900 Sobic009G073000--Sobic003G188000 Sobic005G231700 Sobic005G231700 Sobic009G073000--Sobic005G231700 Sobic002G362900 Sobic002G362900 Sobic009G073000--Sobic002G362900 Sobic006G064800 Sobic006G064800 Sobic009G073000--Sobic006G064800 Sobic009G073000--Sobic010G071700 Sobic001G063600 Sobic001G063600 Sobic009G073000--Sobic001G063600 Sobic003G225900 Sobic003G225900 Sobic009G073000--Sobic003G225900 Sobic002G293300 Sobic002G293300 Sobic009G073000--Sobic002G293300 Sobic003G342600 Sobic003G342600 Sobic010G071700--Sobic003G342600 Sobic010G071700--Sobic003G141800 Sobic010G071700--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic010G071700--Sobic009G170100 Sobic003G129400 Sobic003G129400 Sobic010G071700--Sobic003G129400 Sobic009G030200 Sobic009G030200 Sobic010G071700--Sobic009G030200 Sobic010G071700--Sobic005G231700 Sobic010G071700--Sobic010G265600 Sobic006G032200 Sobic006G032200 Sobic010G071700--Sobic006G032200 Sobic001G125100 Sobic001G125100 Sobic001G243000--Sobic001G125100 Sobic003G373150 Sobic003G373150 Sobic001G243000--Sobic003G373150 Sobic010G006700 Sobic010G006700 Sobic001G243000--Sobic010G006700 Sobic001G159850 Sobic001G159850 Sobic001G243000--Sobic001G159850 Sobic009G000700 Sobic009G000700 Sobic006G267900--Sobic009G000700 Sobic006G267900--Sobic010G006700 Sobic004G310600 Sobic004G310600 Sobic006G267900--Sobic004G310600 Sobic003G078501 Sobic003G078501 Sobic006G267900--Sobic003G078501 Sobic006G267900--Sobic001G125100 Sobic004G155150 Sobic004G155150 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic004G331300 Sobic004G331300 Sobic006G267900--Sobic004G331300 Sobic007G101800 Sobic007G101800 Sobic010G265600--Sobic007G101800 Sobic010G265600--Sobic009G170100 Sobic010G265600--Sobic003G141800 Sobic004G283300 Sobic004G283300 Sobic010G265600--Sobic004G283300 Sobic010G265600--Sobic006G032200 Sobic001G081600 Sobic001G081600 Sobic010G265600--Sobic001G081600 Sobic010G265600--Sobic002G203000 Sobic006G203000 Sobic006G203000 Sobic010G265600--Sobic006G203000 Sobic010G265600--Sobic010G071700 Sobic003G141800--Sobic006G267900 Sobic003G141800--Sobic010G071700 Sobic002G189000 Sobic002G189000 Sobic003G141800--Sobic002G189000 Sobic003G141800--Sobic004G283300 Sobic003G141800--Sobic003G373150 Sobic003G233900 Sobic003G233900 Sobic003G141800--Sobic003G233900 Sobic001G430700 Sobic001G430700 Sobic003G141800--Sobic001G430700 Sobic004G285100 Sobic004G285100 Sobic003G141800--Sobic004G285100 Sobic003G141800--Sobic006G032200 Sobic006G055600 Sobic006G055600 Sobic004G321000--Sobic006G055600 Sobic009G163900 Sobic009G163900 Sobic004G321000--Sobic009G163900 Sobic004G278200 Sobic004G278200 Sobic004G321000--Sobic004G278200 Sobic004G321000--Sobic003G373150 Sobic006G005600 Sobic006G005600 Sobic004G321000--Sobic006G005600 Sobic001G092600 Sobic001G092600 Sobic004G321000--Sobic001G092600 Sobic009G201500 Sobic009G201500 Sobic004G321000--Sobic009G201500 Sobic004G283201 Sobic004G283201 Sobic004G321000--Sobic004G283201 Sobic006G184800 Sobic006G184800 Sobic004G321000--Sobic006G184800 Sobic009G258300 Sobic009G258300 Sobic003G293600--Sobic009G258300 Sobic003G293600--Sobic004G278200 Sobic007G166900 Sobic007G166900 Sobic003G293600--Sobic007G166900 Sobic003G293600--Sobic006G267900 Sobic003G293600--Sobic010G006700 Sobic002G427400 Sobic002G427400 Sobic003G293600--Sobic002G427400 Sobic003G293600--Sobic001G125100 Sobic003G293600--Sobic003G373150 Sobic003G293600--Sobic004G321000 Sobic001G077700 Sobic001G077700 Sobic002G203000--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic002G203000--Sobic009G071800 Sobic006G095600 Sobic006G095600 Sobic002G203000--Sobic006G095600 Sobic001G489600 Sobic001G489600 Sobic002G203000--Sobic001G489600 Sobic010G076700 Sobic010G076700 Sobic002G203000--Sobic010G076700 Sobic002G203000--Sobic009G258300 Sobic001G473900 Sobic001G473900 Sobic002G203000--Sobic001G473900 Sobic007G057100 Sobic007G057100 Sobic002G203000--Sobic007G057100 Sobic002G248100 Sobic002G248100 Sobic002G203000--Sobic002G248100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.