Gene annotation
Transcriptome id Sobic.003G225900.1
Synonym Sb03g028370
Functional annotation expressed protein
UniProt C5XR69
Pfam PF00168
Panther DB PTHR23180 PTHR23180:SF273
NCBI CDD KOG1030; Predicted Ca2+-dependent phospholipid-binding protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G48590 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os02g22130.1 : expressed protein
MaizeGDB (Corn) Zm00025a038584 , Zm00025a028365 , Zm00025a007385
Brachypodium -
Barley HORVU0Hr1G039050.4 , HORVU0Hr1G039050.1 , HORVU0Hr1G039050.3 , HORVU0Hr1G039050.2
Wheat TraesCS2D02G501800 , TraesCS2D02G501800 , TraesCS2A02G501300 , TraesCS2A02G501300 , TraesCS2B02G529400
Populus -


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cDNA sequences
Sobic.003G225900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
2 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
3 Sobic.002G271100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
4 Sobic.002G427400 COBRA-like protein 7 precursor, putative, expressed -
5 Sobic.003G373150 - -
6 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
7 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
9 Sobic.004G283201 - -
10 Sobic.003G078501 - -
11 Sobic.007G025800 amino acid transporter, putative, expressed -
12 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
13 Sobic.002G089700 cytochrome P450, putative, expressed -
14 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
15 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
16 Sobic.004G155150 - -
17 Sobic.004G283300 AP2 domain containing protein, expressed -
18 Sobic.003G233900 - -
19 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
20 Sobic.001G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote


Gene co-expression network
sample Sobic003G225900 Sobic003G225900 Sobic006G267900 Sobic006G267900 Sobic003G225900--Sobic006G267900 Sobic002G189000 Sobic002G189000 Sobic003G225900--Sobic002G189000 Sobic002G271100 Sobic002G271100 Sobic003G225900--Sobic002G271100 Sobic002G427400 Sobic002G427400 Sobic003G225900--Sobic002G427400 Sobic003G373150 Sobic003G373150 Sobic003G225900--Sobic003G373150 Sobic001G081600 Sobic001G081600 Sobic003G225900--Sobic001G081600 Sobic010G260300 Sobic010G260300 Sobic003G225900--Sobic010G260300 Sobic005G087800 Sobic005G087800 Sobic003G225900--Sobic005G087800 Sobic004G283201 Sobic004G283201 Sobic003G225900--Sobic004G283201 Sobic009G000700 Sobic009G000700 Sobic006G267900--Sobic009G000700 Sobic010G006700 Sobic010G006700 Sobic006G267900--Sobic010G006700 Sobic004G310600 Sobic004G310600 Sobic006G267900--Sobic004G310600 Sobic003G078501 Sobic003G078501 Sobic006G267900--Sobic003G078501 Sobic001G125100 Sobic001G125100 Sobic006G267900--Sobic001G125100 Sobic004G155150 Sobic004G155150 Sobic006G267900--Sobic004G155150 Sobic006G267900--Sobic003G373150 Sobic003G367350 Sobic003G367350 Sobic006G267900--Sobic003G367350 Sobic004G331300 Sobic004G331300 Sobic006G267900--Sobic004G331300 Sobic002G013900 Sobic002G013900 Sobic002G189000--Sobic002G013900 Sobic003G233900 Sobic003G233900 Sobic002G189000--Sobic003G233900 Sobic002G189000--Sobic002G271100 Sobic002G189000--Sobic010G260300 Sobic009G128300 Sobic009G128300 Sobic002G189000--Sobic009G128300 Sobic002G110200 Sobic002G110200 Sobic002G189000--Sobic002G110200 Sobic002G189000--Sobic003G225900 Sobic002G189000--Sobic004G155150 Sobic004G285100 Sobic004G285100 Sobic002G189000--Sobic004G285100 Sobic002G271100--Sobic002G189000 Sobic002G271100--Sobic006G267900 Sobic002G271100--Sobic003G373150 Sobic002G271100--Sobic003G225900 Sobic002G271100--Sobic004G155150 Sobic002G271100--Sobic002G013900 Sobic002G271100--Sobic003G233900 Sobic002G271100--Sobic010G260300 Sobic002G271100--Sobic009G000700 Sobic007G166900 Sobic007G166900 Sobic002G427400--Sobic007G166900 Sobic001G080300 Sobic001G080300 Sobic002G427400--Sobic001G080300 Sobic008G159100 Sobic008G159100 Sobic002G427400--Sobic008G159100 Sobic004G278200 Sobic004G278200 Sobic002G427400--Sobic004G278200 Sobic002G427400--Sobic003G373150 Sobic002G427400--Sobic010G006700 Sobic002G427400--Sobic003G225900 Sobic003G032900 Sobic003G032900 Sobic002G427400--Sobic003G032900 Sobic002G427400--Sobic006G267900 Sobic003G373150--Sobic004G310600 Sobic003G373150--Sobic001G125100 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic003G373150--Sobic004G283201 Sobic003G373150--Sobic003G078501 Sobic006G055600 Sobic006G055600 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic003G373150--Sobic004G278200 Sobic001G462800 Sobic001G462800 Sobic001G081600--Sobic001G462800 Sobic002G217100 Sobic002G217100 Sobic001G081600--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic001G081600--Sobic006G210300 Sobic004G283300 Sobic004G283300 Sobic001G081600--Sobic004G283300 Sobic002G197600 Sobic002G197600 Sobic001G081600--Sobic002G197600 Sobic004G281200 Sobic004G281200 Sobic001G081600--Sobic004G281200 Sobic002G344700 Sobic002G344700 Sobic001G081600--Sobic002G344700 Sobic004G025000 Sobic004G025000 Sobic001G081600--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic001G081600--Sobic001G476400 Sobic010G260300--Sobic002G189000 Sobic003G229000 Sobic003G229000 Sobic010G260300--Sobic003G229000 Sobic009G183000 Sobic009G183000 Sobic010G260300--Sobic009G183000 Sobic007G025800 Sobic007G025800 Sobic010G260300--Sobic007G025800 Sobic010G260300--Sobic002G271100 Sobic010G260300--Sobic003G225900 Sobic010G260300--Sobic004G155150 Sobic010G260300--Sobic003G233900 Sobic003G198150 Sobic003G198150 Sobic010G260300--Sobic003G198150 Sobic005G087800--Sobic003G233900 Sobic005G087800--Sobic004G285100 Sobic002G182800 Sobic002G182800 Sobic005G087800--Sobic002G182800 Sobic005G087800--Sobic002G189000 Sobic005G087800--Sobic004G283300 Sobic005G087800--Sobic004G310600 Sobic003G227600 Sobic003G227600 Sobic005G087800--Sobic003G227600 Sobic005G087800--Sobic009G128300 Sobic005G087800--Sobic009G000700 Sobic004G283201--Sobic006G055600 Sobic006G005600 Sobic006G005600 Sobic004G283201--Sobic006G005600 Sobic004G283201--Sobic003G373150 Sobic006G184800 Sobic006G184800 Sobic004G283201--Sobic006G184800 Sobic001G092600 Sobic001G092600 Sobic004G283201--Sobic001G092600 Sobic004G283201--Sobic004G283300 Sobic010G016500 Sobic010G016500 Sobic004G283201--Sobic010G016500 Sobic004G283201--Sobic001G125100 Sobic009G201500 Sobic009G201500 Sobic004G283201--Sobic009G201500
Octagon: transcription factors


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