Gene annotation
Transcriptome id Sobic.009G073000.1
Synonym Sb09g006140
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsGrx_C15 - glutaredoxin subgroup III, expressed
UniProt C5YUE5
Pfam PF00462
Panther DB PTHR10168 PTHR10168:SF56
NCBI CDD KOG1752; Glutaredoxin and related proteins
KEGG Orthology -
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0009055electron transfer activity


Orthologs (automatic annotation)
TAIR AT5G11930 : Thioredoxin superfamily protein
RAP-DB (Rice) LOC_Os05g10930.1 : OsGrx_C15 - glutaredoxin subgroup III, expressed
MaizeGDB (Corn) Zm00025a043163
Brachypodium -
Barley -
Wheat TraesCS3A02G105300
Populus -


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cDNA sequences
Sobic.009G073000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
2 Sobic.003G188000 TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
4 Sobic.002G362900 IBS1, putative, expressed -
5 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
6 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
8 Sobic.003G225900 expressed protein -
9 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
10 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote
11 Sobic.003G032900 expressed protein -
12 Sobic.003G141800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@polygalacturonase, putative, expressed -
13 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.002G427400 COBRA-like protein 7 precursor, putative, expressed -
15 Sobic.001G051800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBDUF18 - F-box and DUF domain containing protein, expressed -
16 Sobic.010G265600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein of unknown function (DUF581)(PubMedID : 28640841)@DUF581 domain containing protein, expressed -
17 Sobic.002G325900 aspartic proteinase nepenthesin precursor, putative, expressed -
18 Sobic.004G278200 DUF581 domain containing protein, expressed -
19 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin


Gene co-expression network
sample Sobic009G073000 Sobic009G073000 Sobic006G087900 Sobic006G087900 Sobic009G073000--Sobic006G087900 Sobic003G188000 Sobic003G188000 Sobic009G073000--Sobic003G188000 Sobic005G231700 Sobic005G231700 Sobic009G073000--Sobic005G231700 Sobic002G362900 Sobic002G362900 Sobic009G073000--Sobic002G362900 Sobic006G064800 Sobic006G064800 Sobic009G073000--Sobic006G064800 Sobic010G071700 Sobic010G071700 Sobic009G073000--Sobic010G071700 Sobic001G063600 Sobic001G063600 Sobic009G073000--Sobic001G063600 Sobic003G225900 Sobic003G225900 Sobic009G073000--Sobic003G225900 Sobic002G293300 Sobic002G293300 Sobic009G073000--Sobic002G293300 Sobic006G087900--Sobic005G231700 Sobic006G087900--Sobic002G362900 Sobic003G296700 Sobic003G296700 Sobic006G087900--Sobic003G296700 Sobic006G087900--Sobic001G063600 Sobic006G076201 Sobic006G076201 Sobic006G087900--Sobic006G076201 Sobic010G080400 Sobic010G080400 Sobic006G087900--Sobic010G080400 Sobic002G325900 Sobic002G325900 Sobic006G087900--Sobic002G325900 Sobic001G051800 Sobic001G051800 Sobic006G087900--Sobic001G051800 Sobic009G220200 Sobic009G220200 Sobic006G087900--Sobic009G220200 Sobic003G188000--Sobic009G073000 Sobic003G188000--Sobic010G071700 Sobic001G243000 Sobic001G243000 Sobic003G188000--Sobic001G243000 Sobic006G267900 Sobic006G267900 Sobic003G188000--Sobic006G267900 Sobic010G265600 Sobic010G265600 Sobic003G188000--Sobic010G265600 Sobic003G141800 Sobic003G141800 Sobic003G188000--Sobic003G141800 Sobic004G321000 Sobic004G321000 Sobic003G188000--Sobic004G321000 Sobic003G293600 Sobic003G293600 Sobic003G188000--Sobic003G293600 Sobic002G203000 Sobic002G203000 Sobic003G188000--Sobic002G203000 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic005G231700--Sobic002G325900 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic008G159100 Sobic008G159100 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic007G188100 Sobic007G188100 Sobic002G362900--Sobic007G188100 Sobic002G362900--Sobic006G087900 Sobic002G362900--Sobic009G220200 Sobic002G362900--Sobic009G208800 Sobic004G145200 Sobic004G145200 Sobic002G362900--Sobic004G145200 Sobic002G362900--Sobic005G231700 Sobic008G016900 Sobic008G016900 Sobic002G362900--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G362900--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic002G362900--Sobic001G409900 Sobic006G064800--Sobic006G087900 Sobic005G195600 Sobic005G195600 Sobic006G064800--Sobic005G195600 Sobic003G374700 Sobic003G374700 Sobic006G064800--Sobic003G374700 Sobic006G064800--Sobic002G362900 Sobic010G161450 Sobic010G161450 Sobic006G064800--Sobic010G161450 Sobic001G012800 Sobic001G012800 Sobic006G064800--Sobic001G012800 Sobic006G064800--Sobic001G051800 Sobic010G236500 Sobic010G236500 Sobic006G064800--Sobic010G236500 Sobic006G064800--Sobic009G073000 Sobic003G342600 Sobic003G342600 Sobic010G071700--Sobic003G342600 Sobic010G071700--Sobic003G141800 Sobic010G071700--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic010G071700--Sobic009G170100 Sobic003G129400 Sobic003G129400 Sobic010G071700--Sobic003G129400 Sobic009G030200 Sobic009G030200 Sobic010G071700--Sobic009G030200 Sobic010G071700--Sobic005G231700 Sobic010G071700--Sobic010G265600 Sobic006G032200 Sobic006G032200 Sobic010G071700--Sobic006G032200 Sobic001G476400 Sobic001G476400 Sobic001G063600--Sobic001G476400 Sobic001G063600--Sobic005G231700 Sobic001G063600--Sobic010G080400 Sobic001G063600--Sobic008G159100 Sobic001G063600--Sobic009G170100 Sobic003G032900 Sobic003G032900 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic003G225900--Sobic006G267900 Sobic002G189000 Sobic002G189000 Sobic003G225900--Sobic002G189000 Sobic002G271100 Sobic002G271100 Sobic003G225900--Sobic002G271100 Sobic002G427400 Sobic002G427400 Sobic003G225900--Sobic002G427400 Sobic003G373150 Sobic003G373150 Sobic003G225900--Sobic003G373150 Sobic003G225900--Sobic001G081600 Sobic010G260300 Sobic010G260300 Sobic003G225900--Sobic010G260300 Sobic005G087800 Sobic005G087800 Sobic003G225900--Sobic005G087800 Sobic004G283201 Sobic004G283201 Sobic003G225900--Sobic004G283201 Sobic003G367300 Sobic003G367300 Sobic002G293300--Sobic003G367300 Sobic001G436000 Sobic001G436000 Sobic002G293300--Sobic001G436000 Sobic002G379400 Sobic002G379400 Sobic002G293300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G293300--Sobic010G052800 Sobic009G231200 Sobic009G231200 Sobic002G293300--Sobic009G231200 Sobic002G330300 Sobic002G330300 Sobic002G293300--Sobic002G330300 Sobic001G082900 Sobic001G082900 Sobic002G293300--Sobic001G082900 Sobic002G293300--Sobic004G025000 Sobic001G516100 Sobic001G516100 Sobic002G293300--Sobic001G516100
Octagon: transcription factors


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