Gene annotation
Transcriptome id Sobic.003G032900.2
Synonym
Functional annotation expressed protein
UniProt C5XLW9
Pfam -
Panther DB PTHR31182
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G11760 : -
RAP-DB (Rice) LOC_Os01g09770.1 : expressed protein
MaizeGDB (Corn) Zm00025a023021 , Zm00025a035793
Brachypodium PNT70110 , PNT70111 , KQK03144
Barley HORVU3Hr1G019320.2 , HORVU3Hr1G019320.9 , HORVU3Hr1G019320.3 , HORVU3Hr1G019320.6 , HORVU3Hr1G019320.7 , HORVU3Hr1G019320.4 , HORVU3Hr1G019320.5 , HORVU3Hr1G019320.8
Wheat TraesCS3D02G107900 , TraesCS3D02G107900 , TraesCS3D02G107900 , TraesCS3A02G105700 , TraesCS3B02G124200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.004G278200 DUF581 domain containing protein, expressed -
3 Sobic.002G427400 COBRA-like protein 7 precursor, putative, expressed -
4 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
5 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.001G476400 - -
7 Sobic.003G373150 - -
8 Sobic.010G080400 AP2 domain containing protein, expressed -
9 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.001G460300 expressed protein -
11 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
12 Sobic.002G125300 up-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
13 Sobic.007G166900 auxin-induced protein 5NG4, putative, expressed -
14 Sobic.002G068800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed -
15 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
16 Sobic.010G272101 - -
17 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
18 Sobic.004G283201 - -
19 Sobic.003G225900 expressed protein -
20 Sobic.004G245900 - -


Gene co-expression network
sample Sobic003G032900 Sobic003G032900 Sobic001G063600 Sobic001G063600 Sobic003G032900--Sobic001G063600 Sobic004G278200 Sobic004G278200 Sobic003G032900--Sobic004G278200 Sobic002G427400 Sobic002G427400 Sobic003G032900--Sobic002G427400 Sobic008G159100 Sobic008G159100 Sobic003G032900--Sobic008G159100 Sobic001G080300 Sobic001G080300 Sobic003G032900--Sobic001G080300 Sobic001G476400 Sobic001G476400 Sobic003G032900--Sobic001G476400 Sobic003G373150 Sobic003G373150 Sobic003G032900--Sobic003G373150 Sobic010G080400 Sobic010G080400 Sobic003G032900--Sobic010G080400 Sobic004G025000 Sobic004G025000 Sobic003G032900--Sobic004G025000 Sobic001G063600--Sobic001G476400 Sobic005G231700 Sobic005G231700 Sobic001G063600--Sobic005G231700 Sobic001G063600--Sobic010G080400 Sobic001G063600--Sobic008G159100 Sobic009G170100 Sobic009G170100 Sobic001G063600--Sobic009G170100 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic004G278200--Sobic003G373150 Sobic007G166900 Sobic007G166900 Sobic004G278200--Sobic007G166900 Sobic006G055600 Sobic006G055600 Sobic004G278200--Sobic006G055600 Sobic004G278200--Sobic001G080300 Sobic004G278200--Sobic002G427400 Sobic004G321000 Sobic004G321000 Sobic004G278200--Sobic004G321000 Sobic004G278200--Sobic001G063600 Sobic004G278200--Sobic003G032900 Sobic004G283201 Sobic004G283201 Sobic004G278200--Sobic004G283201 Sobic002G427400--Sobic007G166900 Sobic002G427400--Sobic001G080300 Sobic002G427400--Sobic008G159100 Sobic002G427400--Sobic004G278200 Sobic002G427400--Sobic003G373150 Sobic010G006700 Sobic010G006700 Sobic002G427400--Sobic010G006700 Sobic003G225900 Sobic003G225900 Sobic002G427400--Sobic003G225900 Sobic002G427400--Sobic003G032900 Sobic006G267900 Sobic006G267900 Sobic002G427400--Sobic006G267900 Sobic008G159100--Sobic001G063600 Sobic008G159100--Sobic002G427400 Sobic008G000500 Sobic008G000500 Sobic008G159100--Sobic008G000500 Sobic001G051600 Sobic001G051600 Sobic008G159100--Sobic001G051600 Sobic008G159100--Sobic001G476400 Sobic004G264500 Sobic004G264500 Sobic008G159100--Sobic004G264500 Sobic008G159100--Sobic005G231700 Sobic004G245850 Sobic004G245850 Sobic008G159100--Sobic004G245850 Sobic008G159100--Sobic001G080300 Sobic001G080300--Sobic002G427400 Sobic001G080300--Sobic004G278200 Sobic001G080300--Sobic007G166900 Sobic001G080300--Sobic008G159100 Sobic001G080300--Sobic003G032900 Sobic001G080300--Sobic010G080400 Sobic001G080300--Sobic001G063600 Sobic001G080300--Sobic003G373150 Sobic005G115800 Sobic005G115800 Sobic001G080300--Sobic005G115800 Sobic001G476400--Sobic001G063600 Sobic001G476400--Sobic001G051600 Sobic001G473900 Sobic001G473900 Sobic001G476400--Sobic001G473900 Sobic010G076600 Sobic010G076600 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic001G476400--Sobic010G080400 Sobic006G095600 Sobic006G095600 Sobic001G476400--Sobic006G095600 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic004G310600 Sobic004G310600 Sobic003G373150--Sobic004G310600 Sobic001G125100 Sobic001G125100 Sobic003G373150--Sobic001G125100 Sobic009G000700 Sobic009G000700 Sobic003G373150--Sobic009G000700 Sobic003G373150--Sobic010G006700 Sobic003G373150--Sobic004G283201 Sobic003G078501 Sobic003G078501 Sobic003G373150--Sobic003G078501 Sobic003G373150--Sobic006G055600 Sobic003G373150--Sobic006G267900 Sobic003G373150--Sobic004G278200 Sobic010G080400--Sobic001G063600 Sobic010G080400--Sobic001G476400 Sobic010G080400--Sobic010G076600 Sobic010G080400--Sobic005G231700 Sobic003G296700 Sobic003G296700 Sobic010G080400--Sobic003G296700 Sobic010G080400--Sobic004G278200 Sobic010G080400--Sobic008G159100 Sobic006G087900 Sobic006G087900 Sobic010G080400--Sobic006G087900 Sobic010G080400--Sobic001G080300 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic004G025000--Sobic006G095600 Sobic002G344700 Sobic002G344700 Sobic004G025000--Sobic002G344700 Sobic002G330300 Sobic002G330300 Sobic004G025000--Sobic002G330300 Sobic004G025000--Sobic001G476400 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.