Gene annotation
Transcriptome id Sobic.001G460300.2,Sobic.001G460300.1,Sobic.001G460300.3
Synonym
Functional annotation expressed protein
UniProt A0A1B6QPQ7 , A0A1Z5SAS0
Pfam PF03763
Panther DB PTHR31471 PTHR31471:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13920 : Remorin family protein
RAP-DB (Rice) LOC_Os03g11300.1,LOC_Os03g11300.2 : expressed protein
MaizeGDB (Corn) Zm00025a001262
Brachypodium -
Barley HORVU4Hr1G068900.20 , HORVU4Hr1G068900.21 , HORVU4Hr1G068900.15 , HORVU4Hr1G068900.14 , HORVU4Hr1G068900.17 , HORVU4Hr1G068900.16 , HORVU4Hr1G068900.11 , HORVU4Hr1G068900.10 , HORVU4Hr1G068900.13 , HORVU4Hr1G068900.12 , HORVU4Hr1G068900.19 , HORVU4Hr1G068900.18 , HORVU4Hr1G068900.22 , HORVU4Hr1G068900.1 , HORVU4Hr1G068900.3 , HORVU4Hr1G068900.2 , HORVU4Hr1G068900.5 , HORVU4Hr1G068900.4 , HORVU4Hr1G068900.7 , HORVU4Hr1G068900.6 , HORVU4Hr1G068900.9 , HORVU4Hr1G068900.8
Wheat TraesCS4B02G250900 , TraesCS4B02G250900 , TraesCS4D02G250800 , TraesCS4D02G250800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
2 Sobic.003G032900 expressed protein -
3 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
4 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
5 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
6 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
7 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.002G325900 aspartic proteinase nepenthesin precursor, putative, expressed -
10 Sobic.003G198150 - -
11 Sobic.009G112600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
12 Sobic.004G257800 chloride transporter, chloride channel family, putative, expressed -
13 Sobic.004G337900 ENTH domain containing protein, expressed K12471: epsin
14 Sobic.004G278200 DUF581 domain containing protein, expressed -
15 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -
16 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
17 Sobic.008G040900 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
18 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
19 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
20 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G460300 Sobic001G460300 Sobic003G278700 Sobic003G278700 Sobic001G460300--Sobic003G278700 Sobic003G032900 Sobic003G032900 Sobic001G460300--Sobic003G032900 Sobic009G099000 Sobic009G099000 Sobic001G460300--Sobic009G099000 Sobic005G121200 Sobic005G121200 Sobic001G460300--Sobic005G121200 Sobic001G157400 Sobic001G157400 Sobic001G460300--Sobic001G157400 Sobic003G227600 Sobic003G227600 Sobic001G460300--Sobic003G227600 Sobic002G337800 Sobic002G337800 Sobic001G460300--Sobic002G337800 Sobic009G216900 Sobic009G216900 Sobic001G460300--Sobic009G216900 Sobic002G325900 Sobic002G325900 Sobic001G460300--Sobic002G325900 Sobic003G278700--Sobic009G099000 Sobic003G278700--Sobic001G157400 Sobic003G278700--Sobic001G460300 Sobic001G050800 Sobic001G050800 Sobic003G278700--Sobic001G050800 Sobic005G231700 Sobic005G231700 Sobic003G278700--Sobic005G231700 Sobic009G030200 Sobic009G030200 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic001G063600 Sobic001G063600 Sobic003G278700--Sobic001G063600 Sobic003G278700--Sobic003G227600 Sobic003G032900--Sobic001G063600 Sobic004G278200 Sobic004G278200 Sobic003G032900--Sobic004G278200 Sobic002G427400 Sobic002G427400 Sobic003G032900--Sobic002G427400 Sobic008G159100 Sobic008G159100 Sobic003G032900--Sobic008G159100 Sobic001G080300 Sobic001G080300 Sobic003G032900--Sobic001G080300 Sobic001G476400 Sobic001G476400 Sobic003G032900--Sobic001G476400 Sobic003G373150 Sobic003G373150 Sobic003G032900--Sobic003G373150 Sobic010G080400 Sobic010G080400 Sobic003G032900--Sobic010G080400 Sobic004G025000 Sobic004G025000 Sobic003G032900--Sobic004G025000 Sobic009G099000--Sobic003G278700 Sobic009G099000--Sobic001G157400 Sobic006G026400 Sobic006G026400 Sobic009G099000--Sobic006G026400 Sobic009G099000--Sobic001G050800 Sobic009G099000--Sobic001G460300 Sobic008G040900 Sobic008G040900 Sobic009G099000--Sobic008G040900 Sobic006G194600 Sobic006G194600 Sobic009G099000--Sobic006G194600 Sobic009G099000--Sobic005G231700 Sobic004G172100 Sobic004G172100 Sobic009G099000--Sobic004G172100 Sobic001G127800 Sobic001G127800 Sobic005G121200--Sobic001G127800 Sobic005G121200--Sobic001G460300 Sobic005G121200--Sobic002G337800 Sobic005G121200--Sobic003G278700 Sobic005G121200--Sobic009G030200 Sobic001G396400 Sobic001G396400 Sobic005G121200--Sobic001G396400 Sobic003G198200 Sobic003G198200 Sobic005G121200--Sobic003G198200 Sobic007G152800 Sobic007G152800 Sobic005G121200--Sobic007G152800 Sobic003G198150 Sobic003G198150 Sobic005G121200--Sobic003G198150 Sobic001G157400--Sobic001G050800 Sobic002G023900 Sobic002G023900 Sobic001G157400--Sobic002G023900 Sobic001G157400--Sobic006G026400 Sobic002G068800 Sobic002G068800 Sobic001G157400--Sobic002G068800 Sobic001G157400--Sobic003G278700 Sobic001G157400--Sobic003G227600 Sobic006G032200 Sobic006G032200 Sobic001G157400--Sobic006G032200 Sobic006G078300 Sobic006G078300 Sobic001G157400--Sobic006G078300 Sobic009G170100 Sobic009G170100 Sobic001G157400--Sobic009G170100 Sobic009G128300 Sobic009G128300 Sobic003G227600--Sobic009G128300 Sobic003G227600--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic003G227600--Sobic003G233900 Sobic002G182800 Sobic002G182800 Sobic003G227600--Sobic002G182800 Sobic003G040800 Sobic003G040800 Sobic003G227600--Sobic003G040800 Sobic002G342100 Sobic002G342100 Sobic003G227600--Sobic002G342100 Sobic001G509400 Sobic001G509400 Sobic003G227600--Sobic001G509400 Sobic001G075101 Sobic001G075101 Sobic003G227600--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic003G227600--Sobic002G331450 Sobic002G337800--Sobic005G231700 Sobic002G337800--Sobic008G159100 Sobic006G087900 Sobic006G087900 Sobic002G337800--Sobic006G087900 Sobic002G337800--Sobic001G063600 Sobic007G057100 Sobic007G057100 Sobic002G337800--Sobic007G057100 Sobic001G051800 Sobic001G051800 Sobic002G337800--Sobic001G051800 Sobic002G210300 Sobic002G210300 Sobic002G337800--Sobic002G210300 Sobic008G000500 Sobic008G000500 Sobic002G337800--Sobic008G000500 Sobic002G337800--Sobic005G121200 Sobic009G216900--Sobic003G227600 Sobic009G216900--Sobic003G233900 Sobic009G216900--Sobic009G128300 Sobic009G216900--Sobic003G040800 Sobic009G216900--Sobic002G182800 Sobic009G216900--Sobic002G342100 Sobic009G216900--Sobic001G509400 Sobic004G285100 Sobic004G285100 Sobic009G216900--Sobic004G285100 Sobic003G079800 Sobic003G079800 Sobic009G216900--Sobic003G079800 Sobic002G325900--Sobic005G231700 Sobic002G325900--Sobic006G087900 Sobic002G325900--Sobic003G278700 Sobic002G325900--Sobic001G063600 Sobic006G076201 Sobic006G076201 Sobic002G325900--Sobic006G076201 Sobic002G325900--Sobic010G080400 Sobic003G016600 Sobic003G016600 Sobic002G325900--Sobic003G016600 Sobic009G002400 Sobic009G002400 Sobic002G325900--Sobic009G002400 Sobic002G372800 Sobic002G372800 Sobic002G325900--Sobic002G372800
Octagon: transcription factors


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