Gene annotation
Transcriptome id Sobic.009G112600.1
Synonym Sb09g018070, UXS4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
NAD dependent epimerase/dehydratase family domain containing protein, expressed
UniProt C5YWV3
Pfam PF01073
Panther DB PTHR10366 PTHR10366:SF379
NCBI CDD -
KEGG Orthology K08678; UXS1, UDP-glucuronate decarboxylase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT2G47650 : UDP-xylose synthase 4
RAP-DB (Rice) LOC_Os05g29990.1 : NAD dependent epimerase/dehydratase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036976 , Zm00025a024344 , Zm00025a052723 , Zm00025a039701 , Zm00025a043361
Brachypodium KQK04145 , KQK06698 , KQK22278
Barley HORVU3Hr1G101730.1 , HORVU7Hr1G023270.1 , HORVU7Hr1G023270.2 , HORVU1Hr1G058810.11 , HORVU1Hr1G058810.10 , HORVU4Hr1G058500.2 , HORVU4Hr1G058500.3 , HORVU7Hr1G095040.2 , HORVU4Hr1G058500.5 , HORVU7Hr1G095040.1 , HORVU1Hr1G058810.2 , HORVU2Hr1G040990.1 , HORVU1Hr1G058810.9 , HORVU1Hr1G058810.5 , HORVU1Hr1G058810.4 , HORVU1Hr1G058810.7 , HORVU1Hr1G058810.6 , HORVU1Hr1G058810.1 , HORVU1Hr1G058810.3 , HORVU5Hr1G086540.1 , HORVU4Hr1G058500.10 , HORVU4Hr1G058500.11 , HORVU4Hr1G058500.12 , HORVU4Hr1G058500.13 , HORVU4Hr1G058500.14 , HORVU4Hr1G058500.15 , HORVU5Hr1G050860.1 , HORVU5Hr1G050860.2 , HORVU2Hr1G019180.1 , HORVU6Hr1G048020.2 , HORVU6Hr1G048020.1 , HORVU1Hr1G089610.1 , HORVU1Hr1G058810.8 , HORVU2Hr1G019180.3 , HORVU3Hr1G100380.1 , HORVU3Hr1G100380.3 , HORVU3Hr1G100380.2 , HORVU4Hr1G058500.1 , HORVU4Hr1G058500.4 , HORVU2Hr1G026700.1 , HORVU4Hr1G058500.6 , HORVU4Hr1G058500.7 , HORVU4Hr1G058500.8 , HORVU4Hr1G058500.9 , HORVU2Hr1G019180.2
Wheat TraesCS4D02G203400 , TraesCS1D02G231600 , TraesCS2D02G111400 , TraesCS2D02G111400 , TraesCS1B02G243800 , TraesCS1B02G243800 , TraesCS1A02G230400 , TraesCS4B02G202500 , TraesCS2B02G129600 , TraesCS2B02G129600 , TraesCS4A02G102100
Populus PNT50781 , PNT04534 , PNT50779 , PNT50778 , PNT50777 , PNT50776 , PNT50780 , PNT50782 , PNT50783 , PNT04535 , PNT04533


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cDNA sequences
Sobic.009G112600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
2 Sobic.001G460300 expressed protein -
3 Sobic.004G257800 chloride transporter, chloride channel family, putative, expressed -
4 Sobic.004G278200 DUF581 domain containing protein, expressed -
5 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
6 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
7 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
8 Sobic.003G198400 - -
9 Sobic.010G080400 AP2 domain containing protein, expressed -
10 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.003G374700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Sad1 / UNC-like C-terminal domain containing protein, putative, expressed -
12 Sobic.003G095400 glycosyltransferase protein, putative, expressed -
13 Sobic.003G032900 expressed protein -
14 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
16 Sobic.002G325900 aspartic proteinase nepenthesin precursor, putative, expressed -
17 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
18 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
19 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
20 Sobic.001G038200 leaf senescence related protein, putative, expressed -


Gene co-expression network
sample Sobic009G112600 Sobic009G112600 Sobic006G087900 Sobic006G087900 Sobic009G112600--Sobic006G087900 Sobic001G460300 Sobic001G460300 Sobic009G112600--Sobic001G460300 Sobic004G257800 Sobic004G257800 Sobic009G112600--Sobic004G257800 Sobic004G278200 Sobic004G278200 Sobic009G112600--Sobic004G278200 Sobic005G231700 Sobic005G231700 Sobic009G112600--Sobic005G231700 Sobic001G063600 Sobic001G063600 Sobic009G112600--Sobic001G063600 Sobic003G278700 Sobic003G278700 Sobic009G112600--Sobic003G278700 Sobic003G198400 Sobic003G198400 Sobic009G112600--Sobic003G198400 Sobic010G080400 Sobic010G080400 Sobic009G112600--Sobic010G080400 Sobic006G087900--Sobic005G231700 Sobic002G362900 Sobic002G362900 Sobic006G087900--Sobic002G362900 Sobic003G296700 Sobic003G296700 Sobic006G087900--Sobic003G296700 Sobic006G087900--Sobic001G063600 Sobic006G076201 Sobic006G076201 Sobic006G087900--Sobic006G076201 Sobic006G087900--Sobic010G080400 Sobic002G325900 Sobic002G325900 Sobic006G087900--Sobic002G325900 Sobic001G051800 Sobic001G051800 Sobic006G087900--Sobic001G051800 Sobic009G220200 Sobic009G220200 Sobic006G087900--Sobic009G220200 Sobic001G460300--Sobic003G278700 Sobic003G032900 Sobic003G032900 Sobic001G460300--Sobic003G032900 Sobic009G099000 Sobic009G099000 Sobic001G460300--Sobic009G099000 Sobic005G121200 Sobic005G121200 Sobic001G460300--Sobic005G121200 Sobic001G157400 Sobic001G157400 Sobic001G460300--Sobic001G157400 Sobic003G227600 Sobic003G227600 Sobic001G460300--Sobic003G227600 Sobic002G337800 Sobic002G337800 Sobic001G460300--Sobic002G337800 Sobic009G216900 Sobic009G216900 Sobic001G460300--Sobic009G216900 Sobic001G460300--Sobic002G325900 Sobic006G156600 Sobic006G156600 Sobic004G257800--Sobic006G156600 Sobic004G172100 Sobic004G172100 Sobic004G257800--Sobic004G172100 Sobic002G075500 Sobic002G075500 Sobic004G257800--Sobic002G075500 Sobic001G108350 Sobic001G108350 Sobic004G257800--Sobic001G108350 Sobic002G372800 Sobic002G372800 Sobic004G257800--Sobic002G372800 Sobic007G180900 Sobic007G180900 Sobic004G257800--Sobic007G180900 Sobic007G009500 Sobic007G009500 Sobic004G257800--Sobic007G009500 Sobic004G257800--Sobic009G099000 Sobic005G110490 Sobic005G110490 Sobic004G257800--Sobic005G110490 Sobic003G373150 Sobic003G373150 Sobic004G278200--Sobic003G373150 Sobic007G166900 Sobic007G166900 Sobic004G278200--Sobic007G166900 Sobic006G055600 Sobic006G055600 Sobic004G278200--Sobic006G055600 Sobic001G080300 Sobic001G080300 Sobic004G278200--Sobic001G080300 Sobic002G427400 Sobic002G427400 Sobic004G278200--Sobic002G427400 Sobic004G321000 Sobic004G321000 Sobic004G278200--Sobic004G321000 Sobic004G278200--Sobic001G063600 Sobic004G278200--Sobic003G032900 Sobic004G283201 Sobic004G283201 Sobic004G278200--Sobic004G283201 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic005G231700--Sobic002G325900 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic008G159100 Sobic008G159100 Sobic005G231700--Sobic008G159100 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic001G063600--Sobic001G476400 Sobic001G063600--Sobic005G231700 Sobic001G063600--Sobic010G080400 Sobic001G063600--Sobic008G159100 Sobic009G170100 Sobic009G170100 Sobic001G063600--Sobic009G170100 Sobic001G063600--Sobic003G032900 Sobic002G068800 Sobic002G068800 Sobic001G063600--Sobic002G068800 Sobic001G081600 Sobic001G081600 Sobic001G063600--Sobic001G081600 Sobic004G283300 Sobic004G283300 Sobic001G063600--Sobic004G283300 Sobic003G278700--Sobic009G099000 Sobic003G278700--Sobic001G157400 Sobic003G278700--Sobic001G460300 Sobic001G050800 Sobic001G050800 Sobic003G278700--Sobic001G050800 Sobic003G278700--Sobic005G231700 Sobic009G030200 Sobic009G030200 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic003G278700--Sobic001G063600 Sobic003G278700--Sobic003G227600 Sobic003G361300 Sobic003G361300 Sobic003G198400--Sobic003G361300 Sobic003G198400--Sobic003G278700 Sobic001G450800 Sobic001G450800 Sobic003G198400--Sobic001G450800 Sobic003G198400--Sobic001G157400 Sobic003G198400--Sobic007G180900 Sobic003G198400--Sobic009G099000 Sobic003G198400--Sobic004G257800 Sobic003G198400--Sobic001G460300 Sobic003G198400--Sobic009G216900 Sobic010G080400--Sobic001G063600 Sobic010G080400--Sobic001G476400 Sobic010G076600 Sobic010G076600 Sobic010G080400--Sobic010G076600 Sobic010G080400--Sobic005G231700 Sobic010G080400--Sobic003G296700 Sobic010G080400--Sobic004G278200 Sobic010G080400--Sobic008G159100 Sobic010G080400--Sobic006G087900 Sobic010G080400--Sobic001G080300
Octagon: transcription factors


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