Gene annotation
Transcriptome id Sobic.004G257800.1
Synonym ATCLC-F, CLCF, CLC-F, Sb04g029635
Functional annotation chloride transporter, chloride channel family, putative, expressed
UniProt A0A194YRK9
Pfam PF00571 PF00654
Panther DB PTHR11689 PTHR11689:SF77
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT1G55620 : chloride channel F
RAP-DB (Rice) LOC_Os02g48880.1 : chloride transporter, chloride channel family, putative, expressed
MaizeGDB (Corn) Zm00025a021837
Brachypodium KQJ98827 , KQJ98826 , PNT69508 , KQK01558 , KQK01557
Barley HORVU6Hr1G071200.9 , HORVU6Hr1G071200.2 , HORVU6Hr1G071200.3 , HORVU6Hr1G071200.1 , HORVU6Hr1G071200.6 , HORVU6Hr1G071200.7 , HORVU6Hr1G071200.4 , HORVU6Hr1G071200.5 , HORVU6Hr1G071200.18 , HORVU6Hr1G071200.12 , HORVU6Hr1G071200.13 , HORVU6Hr1G071200.14 , HORVU6Hr1G071200.15 , HORVU6Hr1G071200.16 , HORVU6Hr1G071200.17 , HORVU6Hr1G071200.8 , HORVU6Hr1G071200.10
Wheat TraesCS6A02G283600 , TraesCS6A02G283600 , TraesCS6A02G283600 , TraesCS6D02G264100 , TraesCS6B02G312100 , TraesCS7B02G136300 , TraesCS6D02G264100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G156600 transporter family protein, putative, expressed -
2 Sobic.004G172100 serine/threonine-protein kinase, putative, expressed -
3 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.001G108350 - -
5 Sobic.002G372800 tyrosine protein kinase domain containing protein, putative, expressed -
6 Sobic.007G180900 BAG domain-containing protein, putative, expressed -
7 Sobic.007G009500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_CR4L.6 - The CR4L subfamily has homology with Crinkly4, expressed -
8 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
9 Sobic.005G110490 - -
10 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
11 Sobic.001G460300 expressed protein -
12 Sobic.004G337900 ENTH domain containing protein, expressed K12471: epsin
13 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
14 Sobic.002G187400 serine/threonine-protein kinase, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
15 Sobic.005G092000 resistance protein, putative, expressed -
16 Sobic.006G242100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase family 43 protein, putative, expressed -
17 Sobic.001G080300 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.010G035900 expressed protein -
19 Sobic.001G396400 expressed protein -
20 Sobic.009G112600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase


Gene co-expression network
sample Sobic004G257800 Sobic004G257800 Sobic006G156600 Sobic006G156600 Sobic004G257800--Sobic006G156600 Sobic004G172100 Sobic004G172100 Sobic004G257800--Sobic004G172100 Sobic002G075500 Sobic002G075500 Sobic004G257800--Sobic002G075500 Sobic001G108350 Sobic001G108350 Sobic004G257800--Sobic001G108350 Sobic002G372800 Sobic002G372800 Sobic004G257800--Sobic002G372800 Sobic007G180900 Sobic007G180900 Sobic004G257800--Sobic007G180900 Sobic007G009500 Sobic007G009500 Sobic004G257800--Sobic007G009500 Sobic009G099000 Sobic009G099000 Sobic004G257800--Sobic009G099000 Sobic005G110490 Sobic005G110490 Sobic004G257800--Sobic005G110490 Sobic006G156600--Sobic004G257800 Sobic006G156600--Sobic007G009500 Sobic006G156600--Sobic002G075500 Sobic004G007600 Sobic004G007600 Sobic006G156600--Sobic004G007600 Sobic006G156600--Sobic001G108350 Sobic001G132800 Sobic001G132800 Sobic006G156600--Sobic001G132800 Sobic009G125900 Sobic009G125900 Sobic006G156600--Sobic009G125900 Sobic003G254700 Sobic003G254700 Sobic006G156600--Sobic003G254700 Sobic007G054500 Sobic007G054500 Sobic006G156600--Sobic007G054500 Sobic006G242100 Sobic006G242100 Sobic004G172100--Sobic006G242100 Sobic003G095400 Sobic003G095400 Sobic004G172100--Sobic003G095400 Sobic009G030200 Sobic009G030200 Sobic004G172100--Sobic009G030200 Sobic006G087900 Sobic006G087900 Sobic004G172100--Sobic006G087900 Sobic009G102600 Sobic009G102600 Sobic004G172100--Sobic009G102600 Sobic003G278700 Sobic003G278700 Sobic004G172100--Sobic003G278700 Sobic004G172100--Sobic009G099000 Sobic004G172100--Sobic004G257800 Sobic001G294400 Sobic001G294400 Sobic004G172100--Sobic001G294400 Sobic009G063400 Sobic009G063400 Sobic002G075500--Sobic009G063400 Sobic002G075500--Sobic009G125900 Sobic002G118700 Sobic002G118700 Sobic002G075500--Sobic002G118700 Sobic009G026101 Sobic009G026101 Sobic002G075500--Sobic009G026101 Sobic004G051300 Sobic004G051300 Sobic002G075500--Sobic004G051300 Sobic001G099100 Sobic001G099100 Sobic002G075500--Sobic001G099100 Sobic002G075500--Sobic007G180900 Sobic002G075500--Sobic003G254700 Sobic002G075500--Sobic006G156600 Sobic001G108350--Sobic002G372800 Sobic001G108350--Sobic004G257800 Sobic007G137300 Sobic007G137300 Sobic001G108350--Sobic007G137300 Sobic001G108350--Sobic006G156600 Sobic003G016600 Sobic003G016600 Sobic001G108350--Sobic003G016600 Sobic001G108350--Sobic005G110490 Sobic001G108350--Sobic007G009500 Sobic001G080300 Sobic001G080300 Sobic001G108350--Sobic001G080300 Sobic001G108350--Sobic006G087900 Sobic002G372800--Sobic007G009500 Sobic003G127100 Sobic003G127100 Sobic002G372800--Sobic003G127100 Sobic002G372800--Sobic001G108350 Sobic002G372800--Sobic004G257800 Sobic002G372800--Sobic005G110490 Sobic001G063600 Sobic001G063600 Sobic002G372800--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic002G372800--Sobic002G325900 Sobic002G372800--Sobic006G242100 Sobic010G008600 Sobic010G008600 Sobic002G372800--Sobic010G008600 Sobic003G144600 Sobic003G144600 Sobic007G180900--Sobic003G144600 Sobic007G180900--Sobic002G075500 Sobic002G187400 Sobic002G187400 Sobic007G180900--Sobic002G187400 Sobic007G180900--Sobic002G118700 Sobic004G261200 Sobic004G261200 Sobic007G180900--Sobic004G261200 Sobic007G180900--Sobic004G257800 Sobic003G198400 Sobic003G198400 Sobic007G180900--Sobic003G198400 Sobic007G180900--Sobic009G099000 Sobic003G353400 Sobic003G353400 Sobic007G180900--Sobic003G353400 Sobic003G045900 Sobic003G045900 Sobic007G009500--Sobic003G045900 Sobic007G009500--Sobic005G110490 Sobic001G072600 Sobic001G072600 Sobic007G009500--Sobic001G072600 Sobic001G360700 Sobic001G360700 Sobic007G009500--Sobic001G360700 Sobic007G009500--Sobic006G156600 Sobic004G232900 Sobic004G232900 Sobic007G009500--Sobic004G232900 Sobic007G009500--Sobic002G372800 Sobic004G339800 Sobic004G339800 Sobic007G009500--Sobic004G339800 Sobic001G133900 Sobic001G133900 Sobic007G009500--Sobic001G133900 Sobic009G099000--Sobic003G278700 Sobic001G157400 Sobic001G157400 Sobic009G099000--Sobic001G157400 Sobic006G026400 Sobic006G026400 Sobic009G099000--Sobic006G026400 Sobic001G050800 Sobic001G050800 Sobic009G099000--Sobic001G050800 Sobic001G460300 Sobic001G460300 Sobic009G099000--Sobic001G460300 Sobic008G040900 Sobic008G040900 Sobic009G099000--Sobic008G040900 Sobic006G194600 Sobic006G194600 Sobic009G099000--Sobic006G194600 Sobic005G231700 Sobic005G231700 Sobic009G099000--Sobic005G231700 Sobic009G099000--Sobic004G172100 Sobic005G110490--Sobic007G009500 Sobic001G006201 Sobic001G006201 Sobic005G110490--Sobic001G006201 Sobic004G248500 Sobic004G248500 Sobic005G110490--Sobic004G248500 Sobic005G115300 Sobic005G115300 Sobic005G110490--Sobic005G115300 Sobic001G503000 Sobic001G503000 Sobic005G110490--Sobic001G503000 Sobic010G192366 Sobic010G192366 Sobic005G110490--Sobic010G192366 Sobic007G167400 Sobic007G167400 Sobic005G110490--Sobic007G167400 Sobic004G312200 Sobic004G312200 Sobic005G110490--Sobic004G312200 Sobic002G318200 Sobic002G318200 Sobic005G110490--Sobic002G318200
Octagon: transcription factors


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