Gene annotation
Transcriptome id Sobic.007G009500.1
Synonym CCR4, Sb07g000996
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
TKL_IRAK_CR4L.6 - The CR4L subfamily has homology with Crinkly4, expressed
UniProt C5YLV2
Pfam PF03109
Panther DB PTHR27003 PTHR27003:SF54
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47850 : CRINKLY4 related 4
RAP-DB (Rice) LOC_Os08g01830.1 : TKL_IRAK_CR4L.6 - The CR4L subfamily has homology with Crinkly4, expressed
MaizeGDB (Corn) Zm00025a040184 , Zm00025a029688 , Zm00025a012726 , Zm00025a038178 , Zm00025a030297 , Zm00025a044003 , Zm00025a049892 , Zm00025a011296
Brachypodium KQK19638 , KQJ88913 , PNT66505 , KQK05701 , KQJ95505 , KQK00403
Barley HORVU0Hr1G039910.2 , HORVU3Hr1G040580.1 , HORVU4Hr1G066310.10 , HORVU1Hr1G083220.6 , HORVU4Hr1G016080.1 , HORVU4Hr1G066310.2 , HORVU4Hr1G066310.8 , HORVU4Hr1G066310.9 , HORVU4Hr1G025070.2 , HORVU4Hr1G025070.3 , HORVU4Hr1G025070.1 , HORVU3Hr1G064110.12 , HORVU5Hr1G107330.2 , HORVU5Hr1G107330.1 , HORVU3Hr1G064110.5 , HORVU4Hr1G066310.11
Wheat TraesCS4A02G062000 , TraesCS5A02G084200 , TraesCS2B02G222100 , TraesCS2D02G202600 , TraesCSU02G047400 , TraesCS2A02G185000 , TraesCS3D02G048000 , TraesCS3A02G262100 , TraesCS3A02G262100 , TraesCS3A02G262100 , TraesCS5B02G089800 , TraesCS2A02G508700 , TraesCS4D02G238900 , TraesCS7D02G318600 , TraesCS7D02G318600 , TraesCS4B02G238700 , TraesCS3B02G295400 , TraesCSU02G047400 , TraesCS3B02G295400 , TraesCS3B02G295400 , TraesCS3D02G262200 , TraesCS3D02G262200 , TraesCS5D02G096200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G045900 gibberellin 3-beta-dioxygenase 2-2, putative, expressed K04124: gibberellin 3beta-dioxygenase
2 Sobic.005G110490 - -
3 Sobic.001G072600 expressed protein -
4 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
5 Sobic.006G156600 transporter family protein, putative, expressed -
6 Sobic.004G232900 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
7 Sobic.002G372800 tyrosine protein kinase domain containing protein, putative, expressed -
8 Sobic.004G339800 phosphate transporter 1, putative, expressed -
9 Sobic.001G133900 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
10 Sobic.001G307700 expressed protein -
11 Sobic.001G483600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase APK1B, chloroplast precursor, putative, expressed -
12 Sobic.005G022200 XRN 5-3 exonuclease N-terminus family protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
13 Sobic.005G092000 resistance protein, putative, expressed -
14 Sobic.010G192366 - -
15 Sobic.001G006201 - -
16 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
17 Sobic.004G177000 glycosyl transferase, putative, expressed -
18 Sobic.002G214200 ferric reductase, putative, expressed K13447: respiratory burst oxidase
19 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.004G257800 chloride transporter, chloride channel family, putative, expressed -


Gene co-expression network
sample Sobic007G009500 Sobic007G009500 Sobic003G045900 Sobic003G045900 Sobic007G009500--Sobic003G045900 Sobic005G110490 Sobic005G110490 Sobic007G009500--Sobic005G110490 Sobic001G072600 Sobic001G072600 Sobic007G009500--Sobic001G072600 Sobic001G360700 Sobic001G360700 Sobic007G009500--Sobic001G360700 Sobic006G156600 Sobic006G156600 Sobic007G009500--Sobic006G156600 Sobic004G232900 Sobic004G232900 Sobic007G009500--Sobic004G232900 Sobic002G372800 Sobic002G372800 Sobic007G009500--Sobic002G372800 Sobic004G339800 Sobic004G339800 Sobic007G009500--Sobic004G339800 Sobic001G133900 Sobic001G133900 Sobic007G009500--Sobic001G133900 Sobic009G095800 Sobic009G095800 Sobic003G045900--Sobic009G095800 Sobic003G007400 Sobic003G007400 Sobic003G045900--Sobic003G007400 Sobic010G268700 Sobic010G268700 Sobic003G045900--Sobic010G268700 Sobic008G010500 Sobic008G010500 Sobic003G045900--Sobic008G010500 Sobic005G206000 Sobic005G206000 Sobic003G045900--Sobic005G206000 Sobic003G161400 Sobic003G161400 Sobic003G045900--Sobic003G161400 Sobic001G342000 Sobic001G342000 Sobic003G045900--Sobic001G342000 Sobic006G097900 Sobic006G097900 Sobic003G045900--Sobic006G097900 Sobic003G255600 Sobic003G255600 Sobic003G045900--Sobic003G255600 Sobic005G110490--Sobic007G009500 Sobic001G006201 Sobic001G006201 Sobic005G110490--Sobic001G006201 Sobic004G248500 Sobic004G248500 Sobic005G110490--Sobic004G248500 Sobic005G115300 Sobic005G115300 Sobic005G110490--Sobic005G115300 Sobic001G503000 Sobic001G503000 Sobic005G110490--Sobic001G503000 Sobic010G192366 Sobic010G192366 Sobic005G110490--Sobic010G192366 Sobic007G167400 Sobic007G167400 Sobic005G110490--Sobic007G167400 Sobic004G312200 Sobic004G312200 Sobic005G110490--Sobic004G312200 Sobic002G318200 Sobic002G318200 Sobic005G110490--Sobic002G318200 Sobic002G167600 Sobic002G167600 Sobic001G072600--Sobic002G167600 Sobic002G218900 Sobic002G218900 Sobic001G072600--Sobic002G218900 Sobic007G119500 Sobic007G119500 Sobic001G072600--Sobic007G119500 Sobic001G072600--Sobic001G360700 Sobic004G047600 Sobic004G047600 Sobic001G072600--Sobic004G047600 Sobic006G144600 Sobic006G144600 Sobic001G072600--Sobic006G144600 Sobic009G246700 Sobic009G246700 Sobic001G072600--Sobic009G246700 Sobic007G047300 Sobic007G047300 Sobic001G072600--Sobic007G047300 Sobic009G170500 Sobic009G170500 Sobic001G072600--Sobic009G170500 Sobic001G360700--Sobic004G047600 Sobic001G360700--Sobic007G047300 Sobic001G360700--Sobic002G167600 Sobic002G203900 Sobic002G203900 Sobic001G360700--Sobic002G203900 Sobic001G471800 Sobic001G471800 Sobic001G360700--Sobic001G471800 Sobic002G254900 Sobic002G254900 Sobic001G360700--Sobic002G254900 Sobic002G146000 Sobic002G146000 Sobic001G360700--Sobic002G146000 Sobic004G193500 Sobic004G193500 Sobic001G360700--Sobic004G193500 Sobic001G360700--Sobic001G072600 Sobic004G257800 Sobic004G257800 Sobic006G156600--Sobic004G257800 Sobic006G156600--Sobic007G009500 Sobic002G075500 Sobic002G075500 Sobic006G156600--Sobic002G075500 Sobic004G007600 Sobic004G007600 Sobic006G156600--Sobic004G007600 Sobic001G108350 Sobic001G108350 Sobic006G156600--Sobic001G108350 Sobic001G132800 Sobic001G132800 Sobic006G156600--Sobic001G132800 Sobic009G125900 Sobic009G125900 Sobic006G156600--Sobic009G125900 Sobic003G254700 Sobic003G254700 Sobic006G156600--Sobic003G254700 Sobic007G054500 Sobic007G054500 Sobic006G156600--Sobic007G054500 Sobic004G232900--Sobic007G009500 Sobic004G271500 Sobic004G271500 Sobic004G232900--Sobic004G271500 Sobic002G207000 Sobic002G207000 Sobic004G232900--Sobic002G207000 Sobic010G176800 Sobic010G176800 Sobic004G232900--Sobic010G176800 Sobic004G008600 Sobic004G008600 Sobic004G232900--Sobic004G008600 Sobic010G269000 Sobic010G269000 Sobic004G232900--Sobic010G269000 Sobic005G134200 Sobic005G134200 Sobic004G232900--Sobic005G134200 Sobic001G183600 Sobic001G183600 Sobic004G232900--Sobic001G183600 Sobic002G214200 Sobic002G214200 Sobic004G232900--Sobic002G214200 Sobic002G372800--Sobic007G009500 Sobic003G127100 Sobic003G127100 Sobic002G372800--Sobic003G127100 Sobic002G372800--Sobic001G108350 Sobic002G372800--Sobic004G257800 Sobic002G372800--Sobic005G110490 Sobic001G063600 Sobic001G063600 Sobic002G372800--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic002G372800--Sobic002G325900 Sobic006G242100 Sobic006G242100 Sobic002G372800--Sobic006G242100 Sobic010G008600 Sobic010G008600 Sobic002G372800--Sobic010G008600 Sobic003G079100 Sobic003G079100 Sobic004G339800--Sobic003G079100 Sobic002G029500 Sobic002G029500 Sobic004G339800--Sobic002G029500 Sobic002G197000 Sobic002G197000 Sobic004G339800--Sobic002G197000 Sobic003G083800 Sobic003G083800 Sobic004G339800--Sobic003G083800 Sobic005G110511 Sobic005G110511 Sobic004G339800--Sobic005G110511 Sobic006G108300 Sobic006G108300 Sobic004G339800--Sobic006G108300 Sobic007G064900 Sobic007G064900 Sobic004G339800--Sobic007G064900 Sobic009G084400 Sobic009G084400 Sobic004G339800--Sobic009G084400 Sobic004G312500 Sobic004G312500 Sobic004G339800--Sobic004G312500 Sobic009G026101 Sobic009G026101 Sobic001G133900--Sobic009G026101 Sobic001G133900--Sobic009G246700 Sobic001G133900--Sobic004G007600 Sobic001G133900--Sobic003G254700 Sobic010G180100 Sobic010G180100 Sobic001G133900--Sobic010G180100 Sobic004G111100 Sobic004G111100 Sobic001G133900--Sobic004G111100 Sobic001G133900--Sobic002G075500 Sobic009G079100 Sobic009G079100 Sobic001G133900--Sobic009G079100 Sobic001G133900--Sobic009G125900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.