Gene annotation
Transcriptome id Sobic.003G045900.1
Synonym ATGA3OX1, Sb03g004020, GA4, GA3OX1
Functional annotation gibberellin 3-beta-dioxygenase 2-2, putative, expressed
UniProt C5XMS7
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF95
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K04124; gibberellin 3beta-dioxygenase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G15550 : gibberellin 3-oxidase 1
RAP-DB (Rice) LOC_Os01g08220.1 : gibberellin 3-beta-dioxygenase 2-2, putative, expressed
MaizeGDB (Corn) Zm00025a023203
Brachypodium KQK02988
Barley HORVU3Hr1G022840.10 , HORVU3Hr1G022840.9 , HORVU3Hr1G022840.8 , HORVU3Hr1G022840.5 , HORVU3Hr1G022840.4 , HORVU3Hr1G022840.7 , HORVU3Hr1G022840.6 , HORVU3Hr1G022840.1 , HORVU3Hr1G022840.3 , HORVU3Hr1G022840.2
Wheat TraesCS3B02G141800 , TraesCS3D02G124500 , TraesCS3A02G122600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G095800 DUF623 domain containing protein, expressed -
2 Sobic.003G007400 expressed protein -
3 Sobic.010G268700 expansin precursor, putative, expressed -
4 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.005G206000 dirigent, putative, expressed -
6 Sobic.003G161400 powdery mildew resistance protein PM3A, putative, expressed -
7 Sobic.001G342000 expressed protein -
8 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
9 Sobic.003G255600 expressed protein -
10 Sobic.005G046801 - -
11 Sobic.010G214300 - -
12 Sobic.004G193500 expressed protein -
13 Sobic.004G121600 expansin precursor, putative, expressed -
14 Sobic.003G152000 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.007G135100 - -
16 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
17 Sobic.008G164450 - -
18 Sobic.005G216600 plant protein of unknown function domain containing protein, expressed -
19 Sobic.007G111800 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
20 Sobic.001G506800 exostosin family domain containing protein, expressed -


Gene co-expression network
sample Sobic003G045900 Sobic003G045900 Sobic009G095800 Sobic009G095800 Sobic003G045900--Sobic009G095800 Sobic003G007400 Sobic003G007400 Sobic003G045900--Sobic003G007400 Sobic010G268700 Sobic010G268700 Sobic003G045900--Sobic010G268700 Sobic008G010500 Sobic008G010500 Sobic003G045900--Sobic008G010500 Sobic005G206000 Sobic005G206000 Sobic003G045900--Sobic005G206000 Sobic003G161400 Sobic003G161400 Sobic003G045900--Sobic003G161400 Sobic001G342000 Sobic001G342000 Sobic003G045900--Sobic001G342000 Sobic006G097900 Sobic006G097900 Sobic003G045900--Sobic006G097900 Sobic003G255600 Sobic003G255600 Sobic003G045900--Sobic003G255600 Sobic009G095800--Sobic010G268700 Sobic007G015000 Sobic007G015000 Sobic009G095800--Sobic007G015000 Sobic007G111800 Sobic007G111800 Sobic009G095800--Sobic007G111800 Sobic007G212000 Sobic007G212000 Sobic009G095800--Sobic007G212000 Sobic009G095800--Sobic003G007400 Sobic005G216600 Sobic005G216600 Sobic009G095800--Sobic005G216600 Sobic001G293100 Sobic001G293100 Sobic009G095800--Sobic001G293100 Sobic009G095800--Sobic003G161400 Sobic009G095800--Sobic003G255600 Sobic001G506800 Sobic001G506800 Sobic003G007400--Sobic001G506800 Sobic004G121600 Sobic004G121600 Sobic003G007400--Sobic004G121600 Sobic003G007400--Sobic009G095800 Sobic007G186500 Sobic007G186500 Sobic003G007400--Sobic007G186500 Sobic003G007400--Sobic001G342000 Sobic003G007400--Sobic008G010500 Sobic008G164450 Sobic008G164450 Sobic003G007400--Sobic008G164450 Sobic010G214300 Sobic010G214300 Sobic003G007400--Sobic010G214300 Sobic003G007400--Sobic005G216600 Sobic010G268700--Sobic006G097900 Sobic005G060200 Sobic005G060200 Sobic010G268700--Sobic005G060200 Sobic001G301000 Sobic001G301000 Sobic010G268700--Sobic001G301000 Sobic010G268700--Sobic005G216600 Sobic010G268700--Sobic001G293100 Sobic005G197500 Sobic005G197500 Sobic010G268700--Sobic005G197500 Sobic010G268700--Sobic008G010500 Sobic004G002901 Sobic004G002901 Sobic010G268700--Sobic004G002901 Sobic010G268700--Sobic003G161400 Sobic008G010500--Sobic001G301000 Sobic001G231800 Sobic001G231800 Sobic008G010500--Sobic001G231800 Sobic008G010500--Sobic004G121600 Sobic008G010500--Sobic010G268700 Sobic005G119900 Sobic005G119900 Sobic008G010500--Sobic005G119900 Sobic008G010500--Sobic005G206000 Sobic003G441700 Sobic003G441700 Sobic008G010500--Sobic003G441700 Sobic010G245400 Sobic010G245400 Sobic008G010500--Sobic010G245400 Sobic003G053200 Sobic003G053200 Sobic008G010500--Sobic003G053200 Sobic005G206000--Sobic001G301000 Sobic005G206000--Sobic010G268700 Sobic005G206000--Sobic008G010500 Sobic005G206000--Sobic001G231800 Sobic005G177100 Sobic005G177100 Sobic005G206000--Sobic005G177100 Sobic005G206000--Sobic010G245400 Sobic005G206000--Sobic006G097900 Sobic003G053600 Sobic003G053600 Sobic005G206000--Sobic003G053600 Sobic005G206000--Sobic004G002901 Sobic008G033100 Sobic008G033100 Sobic003G161400--Sobic008G033100 Sobic010G242800 Sobic010G242800 Sobic003G161400--Sobic010G242800 Sobic003G161400--Sobic001G293100 Sobic005G182900 Sobic005G182900 Sobic003G161400--Sobic005G182900 Sobic003G161400--Sobic007G015000 Sobic003G161400--Sobic010G268700 Sobic010G213600 Sobic010G213600 Sobic003G161400--Sobic010G213600 Sobic001G415100 Sobic001G415100 Sobic003G161400--Sobic001G415100 Sobic005G097900 Sobic005G097900 Sobic003G161400--Sobic005G097900 Sobic004G014600 Sobic004G014600 Sobic001G342000--Sobic004G014600 Sobic001G342000--Sobic010G213600 Sobic001G342000--Sobic008G033100 Sobic002G166150 Sobic002G166150 Sobic001G342000--Sobic002G166150 Sobic002G029500 Sobic002G029500 Sobic001G342000--Sobic002G029500 Sobic009G165100 Sobic009G165100 Sobic001G342000--Sobic009G165100 Sobic003G079100 Sobic003G079100 Sobic001G342000--Sobic003G079100 Sobic001G272800 Sobic001G272800 Sobic001G342000--Sobic001G272800 Sobic001G342000--Sobic003G255600 Sobic006G097900--Sobic004G121600 Sobic006G097900--Sobic010G268700 Sobic006G097900--Sobic003G441700 Sobic001G181600 Sobic001G181600 Sobic006G097900--Sobic001G181600 Sobic001G218400 Sobic001G218400 Sobic006G097900--Sobic001G218400 Sobic006G097900--Sobic005G216600 Sobic006G097900--Sobic001G293100 Sobic003G441800 Sobic003G441800 Sobic006G097900--Sobic003G441800 Sobic006G097900--Sobic005G119900 Sobic009G106500 Sobic009G106500 Sobic003G255600--Sobic009G106500 Sobic003G255600--Sobic001G342000 Sobic003G255600--Sobic001G293100 Sobic003G255600--Sobic005G182900 Sobic003G255600--Sobic006G097900 Sobic003G255600--Sobic004G014600 Sobic006G171100 Sobic006G171100 Sobic003G255600--Sobic006G171100 Sobic003G255600--Sobic002G029500 Sobic003G255600--Sobic008G033100
Octagon: transcription factors


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