Gene annotation
Transcriptome id Sobic.001G133900.2,Sobic.001G133900.1
Synonym Sb01g011700
Functional annotation peptide transporter PTR2, putative, expressed
UniProt C5WPK0 , C5WPK1
Pfam PF00854
Panther DB PTHR11654 PTHR11654:SF129
NCBI CDD KOG1237; H+/oligopeptide symporter
KEGG Orthology K14638; SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT5G62680 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os03g48180.1 : peptide transporter PTR2, putative, expressed
MaizeGDB (Corn) Zm00025a017093 , Zm00025a004867 , Zm00025a007621
Brachypodium PNT68390 , KQK13743 , KQJ85605
Barley HORVU5Hr1G000800.9 , HORVU5Hr1G000800.8 , HORVU5Hr1G000800.3 , HORVU5Hr1G000800.2 , HORVU5Hr1G000800.1 , HORVU5Hr1G000800.7 , HORVU5Hr1G000800.6 , HORVU5Hr1G000800.5 , HORVU5Hr1G000800.4 , HORVU4Hr1G004460.1 , HORVU4Hr1G004460.2 , HORVU4Hr1G004460.3 , HORVU4Hr1G004460.4 , HORVU4Hr1G004460.5 , HORVU4Hr1G004460.6 , HORVU4Hr1G004460.7 , HORVU7Hr1G018540.1 , HORVU7Hr1G018540.3 , HORVU7Hr1G018540.2 , HORVU2Hr1G006820.1 , HORVU2Hr1G006820.2 , HORVU2Hr1G006820.3 , HORVU5Hr1G000800.13 , HORVU5Hr1G000800.12 , HORVU5Hr1G000800.11 , HORVU5Hr1G000800.10 , HORVU5Hr1G000800.14
Wheat TraesCS4D02G026800 , TraesCS4A02G283900 , TraesCS5D02G012500 , TraesCS5A02G037900 , TraesCS5B02G039100 , TraesCS2D02G044200 , TraesCS2A02G045500 , TraesCS4B02G029600 , TraesCS2B02G057700 , TraesCS5D02G045300 , TraesCS5A02G004400 , TraesCS2B02G057600 , TraesCS5B02G001100
Populus -


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cDNA sequences
Sobic.001G133900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G026101 - -
2 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
3 Sobic.004G007600 glycosyltransferase protein, putative, expressed -
4 Sobic.003G254700 glycosyltransferase family 43 protein, putative, expressed -
5 Sobic.010G180100 transferase family protein, putative, expressed -
6 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
8 Sobic.009G079100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
9 Sobic.009G125900 expressed protein -
10 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
11 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
12 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
13 Sobic.001G072600 expressed protein -
14 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
15 Sobic.007G009500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_CR4L.6 - The CR4L subfamily has homology with Crinkly4, expressed -
16 Sobic.004G319600 polygalacturonase, putative, expressed -
17 Sobic.010G131400 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
18 Sobic.002G218900 plant viral response family protein, putative, expressed -
19 Sobic.002G254900 membrane protein, putative, expressed -
20 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A


Gene co-expression network
sample Sobic001G133900 Sobic001G133900 Sobic009G026101 Sobic009G026101 Sobic001G133900--Sobic009G026101 Sobic009G246700 Sobic009G246700 Sobic001G133900--Sobic009G246700 Sobic004G007600 Sobic004G007600 Sobic001G133900--Sobic004G007600 Sobic003G254700 Sobic003G254700 Sobic001G133900--Sobic003G254700 Sobic010G180100 Sobic010G180100 Sobic001G133900--Sobic010G180100 Sobic004G111100 Sobic004G111100 Sobic001G133900--Sobic004G111100 Sobic002G075500 Sobic002G075500 Sobic001G133900--Sobic002G075500 Sobic009G079100 Sobic009G079100 Sobic001G133900--Sobic009G079100 Sobic009G125900 Sobic009G125900 Sobic001G133900--Sobic009G125900 Sobic009G026101--Sobic001G133900 Sobic009G063400 Sobic009G063400 Sobic009G026101--Sobic009G063400 Sobic009G026101--Sobic009G125900 Sobic009G026101--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G026101--Sobic009G206500 Sobic009G026101--Sobic002G075500 Sobic006G075000 Sobic006G075000 Sobic009G026101--Sobic006G075000 Sobic009G026101--Sobic003G254700 Sobic010G096100 Sobic010G096100 Sobic009G026101--Sobic010G096100 Sobic009G246700--Sobic001G133900 Sobic009G246700--Sobic009G026101 Sobic001G406700 Sobic001G406700 Sobic009G246700--Sobic001G406700 Sobic007G119500 Sobic007G119500 Sobic009G246700--Sobic007G119500 Sobic001G072600 Sobic001G072600 Sobic009G246700--Sobic001G072600 Sobic002G167600 Sobic002G167600 Sobic009G246700--Sobic002G167600 Sobic001G360700 Sobic001G360700 Sobic009G246700--Sobic001G360700 Sobic001G460400 Sobic001G460400 Sobic009G246700--Sobic001G460400 Sobic006G144600 Sobic006G144600 Sobic009G246700--Sobic006G144600 Sobic004G007600--Sobic001G133900 Sobic004G007600--Sobic003G254700 Sobic004G007600--Sobic009G026101 Sobic004G319600 Sobic004G319600 Sobic004G007600--Sobic004G319600 Sobic004G007600--Sobic004G111100 Sobic004G007600--Sobic006G075000 Sobic004G007600--Sobic009G125900 Sobic004G007600--Sobic002G075500 Sobic006G156600 Sobic006G156600 Sobic004G007600--Sobic006G156600 Sobic003G254700--Sobic004G111100 Sobic003G254700--Sobic004G007600 Sobic003G254700--Sobic001G133900 Sobic003G254700--Sobic009G026101 Sobic003G254700--Sobic001G072600 Sobic003G254700--Sobic009G246700 Sobic003G254700--Sobic009G125900 Sobic003G254700--Sobic002G075500 Sobic002G218900 Sobic002G218900 Sobic003G254700--Sobic002G218900 Sobic010G131400 Sobic010G131400 Sobic010G180100--Sobic010G131400 Sobic002G254900 Sobic002G254900 Sobic010G180100--Sobic002G254900 Sobic010G180100--Sobic002G167600 Sobic010G180100--Sobic001G360700 Sobic001G002800 Sobic001G002800 Sobic010G180100--Sobic001G002800 Sobic001G224300 Sobic001G224300 Sobic010G180100--Sobic001G224300 Sobic001G409100 Sobic001G409100 Sobic010G180100--Sobic001G409100 Sobic004G047600 Sobic004G047600 Sobic010G180100--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic010G180100--Sobic003G387500 Sobic010G101900 Sobic010G101900 Sobic004G111100--Sobic010G101900 Sobic007G047300 Sobic007G047300 Sobic004G111100--Sobic007G047300 Sobic004G111100--Sobic003G254700 Sobic009G162300 Sobic009G162300 Sobic004G111100--Sobic009G162300 Sobic003G227700 Sobic003G227700 Sobic004G111100--Sobic003G227700 Sobic004G111100--Sobic001G360700 Sobic002G207200 Sobic002G207200 Sobic004G111100--Sobic002G207200 Sobic004G111100--Sobic001G072600 Sobic009G034300 Sobic009G034300 Sobic004G111100--Sobic009G034300 Sobic002G075500--Sobic009G063400 Sobic002G075500--Sobic009G125900 Sobic002G118700 Sobic002G118700 Sobic002G075500--Sobic002G118700 Sobic002G075500--Sobic009G026101 Sobic004G051300 Sobic004G051300 Sobic002G075500--Sobic004G051300 Sobic001G099100 Sobic001G099100 Sobic002G075500--Sobic001G099100 Sobic007G180900 Sobic007G180900 Sobic002G075500--Sobic007G180900 Sobic002G075500--Sobic003G254700 Sobic002G075500--Sobic006G156600 Sobic010G090500 Sobic010G090500 Sobic009G079100--Sobic010G090500 Sobic003G198500 Sobic003G198500 Sobic009G079100--Sobic003G198500 Sobic009G079100--Sobic009G026101 Sobic009G079100--Sobic004G051300 Sobic007G040301 Sobic007G040301 Sobic009G079100--Sobic007G040301 Sobic007G211600 Sobic007G211600 Sobic009G079100--Sobic007G211600 Sobic009G079100--Sobic001G133900 Sobic009G079100--Sobic009G246700 Sobic009G079100--Sobic009G206500 Sobic009G125900--Sobic009G063400 Sobic009G125900--Sobic009G026101 Sobic009G125900--Sobic002G075500 Sobic009G125900--Sobic002G118700 Sobic009G125900--Sobic010G090500 Sobic004G265600 Sobic004G265600 Sobic009G125900--Sobic004G265600 Sobic009G125900--Sobic010G096100 Sobic009G125900--Sobic004G051300 Sobic009G125900--Sobic003G254700
Octagon: transcription factors


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