Gene annotation
Transcriptome id Sobic.006G075000.1
Synonym Sb06g016230
Functional annotation Late embryogenesis abundant hydroxyproline-rich glycoprotein( (PubMedID : 26759170,(PubMedID : 24597475)
harpin-induced protein 1 domain containing protein, expressed
UniProt C5YGA6
Pfam PF03168
Panther DB PTHR31415 PTHR31415:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44220 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os04g33990.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011473 , Zm00025a053953 , Zm00025a056019 , Zm00025a056018 , Zm00025a020582
Brachypodium KQJ99772 , KQJ82559
Barley HORVU2Hr1G073830.3 , HORVU2Hr1G073830.2 , HORVU2Hr1G073830.1 , HORVU2Hr1G073830.4
Wheat TraesCS2D02G295700 , TraesCS2B02G313900 , TraesCS2A02G297700
Populus -


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cDNA sequences
Sobic.006G075000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G096100 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
2 Sobic.001G208600 receptor kinase like protein, putative, expressed -
3 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
4 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
5 Sobic.002G072200 expressed protein -
6 Sobic.003G099166 - -
7 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
8 Sobic.009G026101 - -
9 Sobic.002G338400 uncharacterized secreted protein, putative, expressed -
10 Sobic.003G062000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
11 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
12 Sobic.002G053900 Cupin domain containing protein, expressed -
13 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
14 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
15 Sobic.004G319600 polygalacturonase, putative, expressed -
16 Sobic.004G007600 glycosyltransferase protein, putative, expressed -
17 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
18 Sobic.010G114000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
19 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
20 Sobic.006G036400 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic006G075000 Sobic006G075000 Sobic010G096100 Sobic010G096100 Sobic006G075000--Sobic010G096100 Sobic001G208600 Sobic001G208600 Sobic006G075000--Sobic001G208600 Sobic001G484000 Sobic001G484000 Sobic006G075000--Sobic001G484000 Sobic009G226900 Sobic009G226900 Sobic006G075000--Sobic009G226900 Sobic002G072200 Sobic002G072200 Sobic006G075000--Sobic002G072200 Sobic003G099166 Sobic003G099166 Sobic006G075000--Sobic003G099166 Sobic003G352700 Sobic003G352700 Sobic006G075000--Sobic003G352700 Sobic009G026101 Sobic009G026101 Sobic006G075000--Sobic009G026101 Sobic002G338400 Sobic002G338400 Sobic006G075000--Sobic002G338400 Sobic010G096100--Sobic006G075000 Sobic010G096100--Sobic001G208600 Sobic009G063400 Sobic009G063400 Sobic010G096100--Sobic009G063400 Sobic010G096100--Sobic009G026101 Sobic009G125900 Sobic009G125900 Sobic010G096100--Sobic009G125900 Sobic009G017500 Sobic009G017500 Sobic010G096100--Sobic009G017500 Sobic009G251100 Sobic009G251100 Sobic010G096100--Sobic009G251100 Sobic010G096100--Sobic001G484000 Sobic010G114000 Sobic010G114000 Sobic010G096100--Sobic010G114000 Sobic005G145100 Sobic005G145100 Sobic001G208600--Sobic005G145100 Sobic001G208600--Sobic003G099166 Sobic001G208600--Sobic006G075000 Sobic003G239100 Sobic003G239100 Sobic001G208600--Sobic003G239100 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic002G030800 Sobic002G030800 Sobic001G208600--Sobic002G030800 Sobic001G208600--Sobic003G352700 Sobic005G052500 Sobic005G052500 Sobic001G484000--Sobic005G052500 Sobic001G046800 Sobic001G046800 Sobic001G484000--Sobic001G046800 Sobic001G484000--Sobic003G352700 Sobic001G484000--Sobic002G053900 Sobic003G269100 Sobic003G269100 Sobic001G484000--Sobic003G269100 Sobic003G082700 Sobic003G082700 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic009G008800 Sobic009G008800 Sobic001G484000--Sobic009G008800 Sobic001G484000--Sobic003G239100 Sobic003G062000 Sobic003G062000 Sobic009G226900--Sobic003G062000 Sobic001G224300 Sobic001G224300 Sobic009G226900--Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic009G226900--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G226900--Sobic002G205500 Sobic003G387500 Sobic003G387500 Sobic009G226900--Sobic003G387500 Sobic006G036400 Sobic006G036400 Sobic009G226900--Sobic006G036400 Sobic001G406700 Sobic001G406700 Sobic009G226900--Sobic001G406700 Sobic005G087200 Sobic005G087200 Sobic009G226900--Sobic005G087200 Sobic009G226900--Sobic006G075000 Sobic009G032600 Sobic009G032600 Sobic002G072200--Sobic009G032600 Sobic002G072200--Sobic006G075000 Sobic002G072200--Sobic003G062000 Sobic002G072200--Sobic009G226900 Sobic009G232200 Sobic009G232200 Sobic002G072200--Sobic009G232200 Sobic002G072200--Sobic006G036400 Sobic010G086800 Sobic010G086800 Sobic002G072200--Sobic010G086800 Sobic002G072200--Sobic001G208600 Sobic002G072200--Sobic003G099166 Sobic003G099166--Sobic001G208600 Sobic003G099166--Sobic001G484000 Sobic001G263900 Sobic001G263900 Sobic003G099166--Sobic001G263900 Sobic003G099166--Sobic006G075000 Sobic003G099166--Sobic005G052500 Sobic003G099166--Sobic003G082700 Sobic003G099166--Sobic003G352700 Sobic002G347300 Sobic002G347300 Sobic003G099166--Sobic002G347300 Sobic009G221900 Sobic009G221900 Sobic003G099166--Sobic009G221900 Sobic003G352700--Sobic003G082700 Sobic004G047600 Sobic004G047600 Sobic003G352700--Sobic004G047600 Sobic003G352700--Sobic009G008800 Sobic003G352700--Sobic003G239100 Sobic001G068500 Sobic001G068500 Sobic003G352700--Sobic001G068500 Sobic003G352700--Sobic001G484000 Sobic001G059500 Sobic001G059500 Sobic003G352700--Sobic001G059500 Sobic005G127200 Sobic005G127200 Sobic003G352700--Sobic005G127200 Sobic007G047300 Sobic007G047300 Sobic003G352700--Sobic007G047300 Sobic001G133900 Sobic001G133900 Sobic009G026101--Sobic001G133900 Sobic009G026101--Sobic009G063400 Sobic009G026101--Sobic009G125900 Sobic009G246700 Sobic009G246700 Sobic009G026101--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G026101--Sobic009G206500 Sobic002G075500 Sobic002G075500 Sobic009G026101--Sobic002G075500 Sobic009G026101--Sobic006G075000 Sobic003G254700 Sobic003G254700 Sobic009G026101--Sobic003G254700 Sobic009G026101--Sobic010G096100 Sobic002G252000 Sobic002G252000 Sobic002G338400--Sobic002G252000 Sobic002G338400--Sobic009G232200 Sobic002G396400 Sobic002G396400 Sobic002G338400--Sobic002G396400 Sobic002G128800 Sobic002G128800 Sobic002G338400--Sobic002G128800 Sobic002G338400--Sobic006G075000 Sobic006G278100 Sobic006G278100 Sobic002G338400--Sobic006G278100 Sobic001G418100 Sobic001G418100 Sobic002G338400--Sobic001G418100 Sobic002G338400--Sobic002G347300 Sobic006G038200 Sobic006G038200 Sobic002G338400--Sobic006G038200
Octagon: transcription factors


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