Gene annotation
Transcriptome id Sobic.009G232200.1
Synonym FLA6, Sb09g028490
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
fasciclin domain containing protein, expressed
UniProt C5YVJ8
Pfam PF02469
Panther DB PTHR32077 PTHR32077:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20520 : FASCICLIN-like arabinogalactan 6
RAP-DB (Rice) LOC_Os05g48900.1 : fasciclin domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036604 , Zm00025a044566
Brachypodium KQK04881 , KQK04882
Barley HORVU1Hr1G087570.2 , HORVU1Hr1G087570.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G232200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G334900 X8 domain containing protein, expressed -
2 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
3 Sobic.002G338400 uncharacterized secreted protein, putative, expressed -
4 Sobic.006G278100 expressed protein -
5 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
6 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -
7 Sobic.002G072200 expressed protein -
8 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
10 Sobic.001G208600 receptor kinase like protein, putative, expressed -
11 Sobic.010G096100 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
12 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
14 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
15 Sobic.010G228100 "DEP3(Ortholog in rice:Qiao et al., 2011)"(PubMedID : 31659937)@PLA IIIA/PLP7, putative, expressed -
16 Sobic.001G107100 "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
17 Sobic.008G178800 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed K00549: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
18 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
19 Sobic.002G053900 Cupin domain containing protein, expressed -
20 Sobic.003G099166 - -


Gene co-expression network
sample Sobic009G232200 Sobic009G232200 Sobic001G334900 Sobic001G334900 Sobic009G232200--Sobic001G334900 Sobic002G347300 Sobic002G347300 Sobic009G232200--Sobic002G347300 Sobic002G338400 Sobic002G338400 Sobic009G232200--Sobic002G338400 Sobic006G278100 Sobic006G278100 Sobic009G232200--Sobic006G278100 Sobic006G075000 Sobic006G075000 Sobic009G232200--Sobic006G075000 Sobic004G168700 Sobic004G168700 Sobic009G232200--Sobic004G168700 Sobic002G072200 Sobic002G072200 Sobic009G232200--Sobic002G072200 Sobic009G032600 Sobic009G032600 Sobic009G232200--Sobic009G032600 Sobic002G252000 Sobic002G252000 Sobic009G232200--Sobic002G252000 Sobic001G334900--Sobic009G232200 Sobic001G012600 Sobic001G012600 Sobic001G334900--Sobic001G012600 Sobic010G228100 Sobic010G228100 Sobic001G334900--Sobic010G228100 Sobic001G208600 Sobic001G208600 Sobic001G334900--Sobic001G208600 Sobic009G033400 Sobic009G033400 Sobic001G334900--Sobic009G033400 Sobic001G334900--Sobic002G347300 Sobic007G050600 Sobic007G050600 Sobic001G334900--Sobic007G050600 Sobic001G012200 Sobic001G012200 Sobic001G334900--Sobic001G012200 Sobic009G063400 Sobic009G063400 Sobic001G334900--Sobic009G063400 Sobic001G012400 Sobic001G012400 Sobic002G347300--Sobic001G012400 Sobic002G347300--Sobic001G012600 Sobic002G347300--Sobic009G232200 Sobic002G347300--Sobic001G334900 Sobic002G347300--Sobic001G208600 Sobic009G221900 Sobic009G221900 Sobic002G347300--Sobic009G221900 Sobic003G099166 Sobic003G099166 Sobic002G347300--Sobic003G099166 Sobic002G053900 Sobic002G053900 Sobic002G347300--Sobic002G053900 Sobic002G347300--Sobic002G338400 Sobic002G338400--Sobic002G252000 Sobic002G338400--Sobic009G232200 Sobic002G396400 Sobic002G396400 Sobic002G338400--Sobic002G396400 Sobic002G128800 Sobic002G128800 Sobic002G338400--Sobic002G128800 Sobic002G338400--Sobic006G075000 Sobic002G338400--Sobic006G278100 Sobic001G418100 Sobic001G418100 Sobic002G338400--Sobic001G418100 Sobic002G338400--Sobic002G347300 Sobic006G038200 Sobic006G038200 Sobic002G338400--Sobic006G038200 Sobic007G150800 Sobic007G150800 Sobic006G278100--Sobic007G150800 Sobic001G107100 Sobic001G107100 Sobic006G278100--Sobic001G107100 Sobic006G278100--Sobic002G128800 Sobic003G250700 Sobic003G250700 Sobic006G278100--Sobic003G250700 Sobic006G278100--Sobic009G232200 Sobic006G278100--Sobic002G338400 Sobic003G122200 Sobic003G122200 Sobic006G278100--Sobic003G122200 Sobic006G191700 Sobic006G191700 Sobic006G278100--Sobic006G191700 Sobic001G261549 Sobic001G261549 Sobic006G278100--Sobic001G261549 Sobic010G096100 Sobic010G096100 Sobic006G075000--Sobic010G096100 Sobic006G075000--Sobic001G208600 Sobic001G484000 Sobic001G484000 Sobic006G075000--Sobic001G484000 Sobic009G226900 Sobic009G226900 Sobic006G075000--Sobic009G226900 Sobic006G075000--Sobic002G072200 Sobic006G075000--Sobic003G099166 Sobic003G352700 Sobic003G352700 Sobic006G075000--Sobic003G352700 Sobic009G026101 Sobic009G026101 Sobic006G075000--Sobic009G026101 Sobic006G075000--Sobic002G338400 Sobic010G086800 Sobic010G086800 Sobic004G168700--Sobic010G086800 Sobic004G168700--Sobic009G032600 Sobic004G168700--Sobic009G232200 Sobic008G082400 Sobic008G082400 Sobic004G168700--Sobic008G082400 Sobic009G211800 Sobic009G211800 Sobic004G168700--Sobic009G211800 Sobic004G168700--Sobic002G072200 Sobic004G243800 Sobic004G243800 Sobic004G168700--Sobic004G243800 Sobic004G168700--Sobic009G226900 Sobic003G108000 Sobic003G108000 Sobic004G168700--Sobic003G108000 Sobic002G072200--Sobic009G032600 Sobic002G072200--Sobic006G075000 Sobic003G062000 Sobic003G062000 Sobic002G072200--Sobic003G062000 Sobic002G072200--Sobic009G226900 Sobic002G072200--Sobic009G232200 Sobic006G036400 Sobic006G036400 Sobic002G072200--Sobic006G036400 Sobic002G072200--Sobic010G086800 Sobic002G072200--Sobic001G208600 Sobic002G072200--Sobic003G099166 Sobic009G032600--Sobic002G072200 Sobic009G032600--Sobic010G086800 Sobic009G032600--Sobic004G168700 Sobic009G032600--Sobic003G062000 Sobic009G032600--Sobic009G232200 Sobic009G032600--Sobic009G226900 Sobic009G032600--Sobic006G075000 Sobic004G319600 Sobic004G319600 Sobic009G032600--Sobic004G319600 Sobic009G032600--Sobic006G036400 Sobic002G252000--Sobic002G128800 Sobic002G252000--Sobic002G338400 Sobic002G252000--Sobic001G418100 Sobic002G252000--Sobic002G396400 Sobic006G156000 Sobic006G156000 Sobic002G252000--Sobic006G156000 Sobic001G038300 Sobic001G038300 Sobic002G252000--Sobic001G038300 Sobic002G252000--Sobic001G107100 Sobic003G443300 Sobic003G443300 Sobic002G252000--Sobic003G443300 Sobic003G219800 Sobic003G219800 Sobic002G252000--Sobic003G219800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.