Gene annotation
Transcriptome id Sobic.001G012600.1,Sobic.001G012600.2
Synonym Sb01g001240
Functional annotation MATE efflux family protein, putative, expressed
UniProt A0A1B6QGW3 , A0A1B6QGS0
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF143
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G21690 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g37490.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017375 , Zm00025a017379 , Zm00025a014789 , Zm00025a014788 , Zm00025a007085 , Zm00025a007080 , Zm00025a048219 , Zm00025a007083
Brachypodium KQK14356 , PNT75015 , PNT75014 , KQJ99282 , KQK15995 , KQK15996 , KQK14361 , KQK14360 , PNT75013
Barley HORVU2Hr1G046420.8 , HORVU2Hr1G046420.9 , HORVU2Hr1G046420.4 , HORVU2Hr1G046420.5 , HORVU2Hr1G046420.7 , HORVU2Hr1G046420.1 , HORVU2Hr1G046420.2 , HORVU1Hr1G007910.10 , HORVU3Hr1G110460.4 , HORVU3Hr1G110460.1 , HORVU3Hr1G110460.3 , HORVU3Hr1G110460.2 , HORVU1Hr1G007910.1 , HORVU1Hr1G007910.2 , HORVU1Hr1G007910.3 , HORVU1Hr1G007910.4 , HORVU1Hr1G007910.5 , HORVU1Hr1G007910.6 , HORVU1Hr1G007910.7 , HORVU1Hr1G007910.8 , HORVU1Hr1G007910.9 , HORVU2Hr1G046420.16 , HORVU2Hr1G046420.17 , HORVU2Hr1G046420.14 , HORVU2Hr1G046420.15 , HORVU2Hr1G046420.12 , HORVU2Hr1G046420.13 , HORVU2Hr1G046420.10 , HORVU5Hr1G082890.10 , HORVU5Hr1G082890.11 , HORVU5Hr1G082890.9 , HORVU5Hr1G082890.2 , HORVU5Hr1G082890.3 , HORVU5Hr1G082890.1 , HORVU5Hr1G082890.6 , HORVU5Hr1G082890.7 , HORVU5Hr1G082890.5
Wheat TraesCS5D02G332300 , TraesCS2A02G222300 , TraesCSU02G124400 , TraesCSU02G124400 , TraesCS1B02G037000 , TraesCSU02G124400 , TraesCS5A02G326300 , TraesCS3A02G499200 , TraesCS3A02G499200 , TraesCS5A02G326300 , TraesCS5A02G326300 , TraesCS5A02G553200 , TraesCS7D02G272900 , TraesCS5A02G326300 , TraesCS3D02G506100 , TraesCS3D02G506100 , TraesCS1A02G029900 , TraesCS3B02G562400 , TraesCS3B02G562400 , TraesCS3D02G506200 , TraesCS7A02G272800 , TraesCS2D02G228200 , TraesCS2D02G228200 , TraesCS5A02G326700 , TraesCS3B02G563700 , TraesCS2B02G247700 , TraesCS2B02G247700 , TraesCS3A02G499300 , TraesCS4B02G388800 , TraesCSU02G124400 , TraesCS5A02G326300 , TraesCS5B02G326600 , TraesCS7B02G170800 , TraesCS3B02G562500 , TraesCS1D02G030400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G012600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G012200 similar to Cytochrome P450 71E1(PubMedID : 24655390)@4-hydroxyphenylacetaldehyde oxime monooxygenase(PubMedID : 27964718)@cytochrome P450, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
2 Sobic.001G334900 X8 domain containing protein, expressed -
3 Sobic.001G012300 "similar to Cytochrome P450 79A1, up-regulated under drought stress "(PubMedID : 24655390)@similar to Cytochrome P450 79A1(PubMedID : 24655390)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@Tyrosine N-monooxygenase(PubMedID : 27964718)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 21880107)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 26361733)@cytochrome P450, putative, expressed K13027: tyrosine N-monooxygenase
4 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
5 Sobic.001G012400 "UDP-glucose glucosyltransferase, up-regulated under drought stress "(PubMedID : 24655390)@p-hydroxymandelonitrile-O-glucosyltransferase(PubMedID : 10585420)@-(PubMedID : 27964718)@UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase. in vitro substrate regiospecificity(PubMedID : 12946413)@"Cyanohydrin beta-glucosyltransferase, similar to UDP-glucose glucosyltransferase, dhurrin biosynthesis"(PubMedID : 10585420)@cytokinin-O-glucosyltransferase 2, putative, expressed K13030: cyanohydrin beta-glucosyltransferase
6 Sobic.001G012500 similar to Glutathione S transferase 1(PubMedID : 24655390)@"Glutathione S transferase 1, up-regulated under all the stress condition"(PubMedID : 24655390)@similar to Glutathione S transferase 1(PubMedID : 24655390)@Glutathione S transferase 1(PubMedID : 24655390)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
8 Sobic.001G345900 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.004G257700 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
10 Sobic.010G225001 - -
11 Sobic.007G190200 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
12 Sobic.001G208600 receptor kinase like protein, putative, expressed -
13 Sobic.005G116500 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
14 Sobic.007G050600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF6 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
15 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
16 Sobic.010G074600 expressed protein -
17 Sobic.009G033400 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.006G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
19 Sobic.005G218600 NBS-LRR disease resistance protein, putative, expressed -
20 Sobic.002G072200 expressed protein -


Gene co-expression network
sample Sobic001G012600 Sobic001G012600 Sobic001G012200 Sobic001G012200 Sobic001G012600--Sobic001G012200 Sobic001G334900 Sobic001G334900 Sobic001G012600--Sobic001G334900 Sobic001G012300 Sobic001G012300 Sobic001G012600--Sobic001G012300 Sobic002G347300 Sobic002G347300 Sobic001G012600--Sobic002G347300 Sobic001G012400 Sobic001G012400 Sobic001G012600--Sobic001G012400 Sobic001G012500 Sobic001G012500 Sobic001G012600--Sobic001G012500 Sobic009G232200 Sobic009G232200 Sobic001G012600--Sobic009G232200 Sobic001G345900 Sobic001G345900 Sobic001G012600--Sobic001G345900 Sobic004G257700 Sobic004G257700 Sobic001G012600--Sobic004G257700 Sobic001G012200--Sobic001G012300 Sobic001G012200--Sobic001G012600 Sobic001G012200--Sobic001G334900 Sobic001G012200--Sobic001G012400 Sobic010G225001 Sobic010G225001 Sobic001G012200--Sobic010G225001 Sobic007G181000 Sobic007G181000 Sobic001G012200--Sobic007G181000 Sobic001G012200--Sobic004G257700 Sobic001G255300 Sobic001G255300 Sobic001G012200--Sobic001G255300 Sobic001G012200--Sobic001G345900 Sobic001G334900--Sobic009G232200 Sobic001G334900--Sobic001G012600 Sobic010G228100 Sobic010G228100 Sobic001G334900--Sobic010G228100 Sobic001G208600 Sobic001G208600 Sobic001G334900--Sobic001G208600 Sobic009G033400 Sobic009G033400 Sobic001G334900--Sobic009G033400 Sobic001G334900--Sobic002G347300 Sobic007G050600 Sobic007G050600 Sobic001G334900--Sobic007G050600 Sobic001G334900--Sobic001G012200 Sobic009G063400 Sobic009G063400 Sobic001G334900--Sobic009G063400 Sobic001G012300--Sobic001G012200 Sobic001G012300--Sobic001G012600 Sobic005G165400 Sobic005G165400 Sobic001G012300--Sobic005G165400 Sobic001G012300--Sobic001G334900 Sobic001G012300--Sobic007G181000 Sobic001G012300--Sobic001G012400 Sobic003G068300 Sobic003G068300 Sobic001G012300--Sobic003G068300 Sobic005G218700 Sobic005G218700 Sobic001G012300--Sobic005G218700 Sobic001G012300--Sobic001G255300 Sobic002G347300--Sobic001G012400 Sobic002G347300--Sobic001G012600 Sobic002G347300--Sobic009G232200 Sobic002G347300--Sobic001G334900 Sobic002G347300--Sobic001G208600 Sobic009G221900 Sobic009G221900 Sobic002G347300--Sobic009G221900 Sobic003G099166 Sobic003G099166 Sobic002G347300--Sobic003G099166 Sobic002G053900 Sobic002G053900 Sobic002G347300--Sobic002G053900 Sobic002G338400 Sobic002G338400 Sobic002G347300--Sobic002G338400 Sobic001G012400--Sobic002G347300 Sobic001G012400--Sobic001G012200 Sobic001G012400--Sobic001G012500 Sobic001G012400--Sobic001G012600 Sobic001G035600 Sobic001G035600 Sobic001G012400--Sobic001G035600 Sobic001G012400--Sobic001G012300 Sobic001G012400--Sobic001G334900 Sobic005G096101 Sobic005G096101 Sobic001G012400--Sobic005G096101 Sobic001G012400--Sobic009G221900 Sobic001G012500--Sobic001G012400 Sobic001G012500--Sobic002G347300 Sobic001G012500--Sobic001G012600 Sobic001G012500--Sobic002G338400 Sobic001G012500--Sobic001G035600 Sobic001G012500--Sobic001G012200 Sobic001G012500--Sobic001G012300 Sobic003G340800 Sobic003G340800 Sobic001G012500--Sobic003G340800 Sobic001G012500--Sobic009G232200 Sobic009G232200--Sobic001G334900 Sobic009G232200--Sobic002G347300 Sobic009G232200--Sobic002G338400 Sobic006G278100 Sobic006G278100 Sobic009G232200--Sobic006G278100 Sobic006G075000 Sobic006G075000 Sobic009G232200--Sobic006G075000 Sobic004G168700 Sobic004G168700 Sobic009G232200--Sobic004G168700 Sobic002G072200 Sobic002G072200 Sobic009G232200--Sobic002G072200 Sobic009G032600 Sobic009G032600 Sobic009G232200--Sobic009G032600 Sobic002G252000 Sobic002G252000 Sobic009G232200--Sobic002G252000 Sobic001G345900--Sobic001G334900 Sobic001G345900--Sobic002G347300 Sobic001G345900--Sobic001G012200 Sobic001G345900--Sobic001G012600 Sobic001G345900--Sobic002G072200 Sobic001G345900--Sobic004G257700 Sobic004G328601 Sobic004G328601 Sobic001G345900--Sobic004G328601 Sobic001G345900--Sobic009G033400 Sobic001G345900--Sobic001G012300 Sobic005G190800 Sobic005G190800 Sobic004G257700--Sobic005G190800 Sobic002G128600 Sobic002G128600 Sobic004G257700--Sobic002G128600 Sobic001G472000 Sobic001G472000 Sobic004G257700--Sobic001G472000 Sobic008G189500 Sobic008G189500 Sobic004G257700--Sobic008G189500 Sobic001G068600 Sobic001G068600 Sobic004G257700--Sobic001G068600 Sobic005G029400 Sobic005G029400 Sobic004G257700--Sobic005G029400 Sobic005G218201 Sobic005G218201 Sobic004G257700--Sobic005G218201 Sobic005G218600 Sobic005G218600 Sobic004G257700--Sobic005G218600 Sobic004G257700--Sobic001G255300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.