Gene annotation
Transcriptome id Sobic.006G249400.1
Synonym GLN2, GS2 , Sb06g031460, GLN2, ATGSL1, GS2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 26976818)
glutamine synthetase, catalytic domain containing protein, expressed
UniProt A0A1B6PNS7
Pfam PF03951 PF00120
Panther DB PTHR20852 PTHR20852:SF53
NCBI CDD -
KEGG Orthology K01915; glnA, glutamine synthetase
Gene Ontology GO:0006807; nitrogen compound metabolic process GO:0006542glutamine biosynthetic process GO:0004356glutamate-ammonia ligase activity


Orthologs (automatic annotation)
TAIR AT5G35630 : glutamine synthetase 2
RAP-DB (Rice) LOC_Os04g56400.1 : glutamine synthetase, catalytic domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057260
Brachypodium KQJ85049 , KQJ85048 , KQJ85047
Barley HORVU2Hr1G111300.14 , HORVU2Hr1G111300.15 , HORVU2Hr1G111300.16 , HORVU2Hr1G111300.17 , HORVU2Hr1G111300.10 , HORVU2Hr1G111300.12 , HORVU2Hr1G111300.13 , HORVU2Hr1G111300.18 , HORVU2Hr1G111300.19 , HORVU2Hr1G111300.20 , HORVU2Hr1G111300.8 , HORVU2Hr1G111300.9 , HORVU2Hr1G111300.6 , HORVU2Hr1G111300.7 , HORVU2Hr1G111300.4 , HORVU2Hr1G111300.5 , HORVU2Hr1G111300.3 , HORVU2Hr1G111300.1 , HORVU2Hr1G111300.11
Wheat TraesCS2D02G500600 , TraesCS2B02G528300 , TraesCS2B02G528300 , TraesCS2A02G500400 , TraesCS2A02G500400
Populus -


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cDNA sequences
Sobic.006G249400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
2 Sobic.003G234101 - -
3 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
4 Sobic.005G218600 NBS-LRR disease resistance protein, putative, expressed -
5 Sobic.004G309300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ferredoxin--nitrite reductase, putative, expressed K00366: ferredoxin-nitrite reductase
6 Sobic.006G256200 Myb-like DNA-binding domain containing protein, putative, expressed -
7 Sobic.005G218700 NB-ARC domain containing protein, expressed -
8 Sobic.006G033800 cytochrome P450, putative, expressed -
9 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.005G218201 - -
11 Sobic.003G110100 cysteine synthase, mitochondrial precursor, putative, expressed K01738: cysteine synthase
12 Sobic.006G161900 expressed protein K08331: autophagy-related protein 13
13 Sobic.001G012300 "similar to Cytochrome P450 79A1, up-regulated under drought stress "(PubMedID : 24655390)@similar to Cytochrome P450 79A1(PubMedID : 24655390)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@Tyrosine N-monooxygenase(PubMedID : 27964718)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 21880107)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 26361733)@cytochrome P450, putative, expressed K13027: tyrosine N-monooxygenase
14 Sobic.002G353300 Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
15 Sobic.003G114200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
16 Sobic.003G008900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
17 Sobic.001G343400 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
18 Sobic.010G052300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBL28 - F-box domain and LRR containing protein, expressed -
19 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
20 Sobic.001G472000 Polyamine oxidase 1("PubMedID : 26759170,PubMedID : 24597475")@amine oxidase, flavin-containing, domain containing protein, expressed K13366: MPAO, polyamine oxidase


Gene co-expression network
sample Sobic006G249400 Sobic006G249400 Sobic004G044200 Sobic004G044200 Sobic006G249400--Sobic004G044200 Sobic003G234101 Sobic003G234101 Sobic006G249400--Sobic003G234101 Sobic007G075700 Sobic007G075700 Sobic006G249400--Sobic007G075700 Sobic005G218600 Sobic005G218600 Sobic006G249400--Sobic005G218600 Sobic004G309300 Sobic004G309300 Sobic006G249400--Sobic004G309300 Sobic006G256200 Sobic006G256200 Sobic006G249400--Sobic006G256200 Sobic005G218700 Sobic005G218700 Sobic006G249400--Sobic005G218700 Sobic006G033800 Sobic006G033800 Sobic006G249400--Sobic006G033800 Sobic001G012600 Sobic001G012600 Sobic006G249400--Sobic001G012600 Sobic009G001500 Sobic009G001500 Sobic004G044200--Sobic009G001500 Sobic007G013400 Sobic007G013400 Sobic004G044200--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic004G044200--Sobic003G295800 Sobic001G541300 Sobic001G541300 Sobic004G044200--Sobic001G541300 Sobic007G185100 Sobic007G185100 Sobic004G044200--Sobic007G185100 Sobic003G328200 Sobic003G328200 Sobic004G044200--Sobic003G328200 Sobic004G044200--Sobic005G218600 Sobic005G218201 Sobic005G218201 Sobic004G044200--Sobic005G218201 Sobic003G386300 Sobic003G386300 Sobic004G044200--Sobic003G386300 Sobic003G234101--Sobic007G075700 Sobic010G052300 Sobic010G052300 Sobic003G234101--Sobic010G052300 Sobic010G240700 Sobic010G240700 Sobic003G234101--Sobic010G240700 Sobic001G343400 Sobic001G343400 Sobic003G234101--Sobic001G343400 Sobic010G171300 Sobic010G171300 Sobic003G234101--Sobic010G171300 Sobic010G240500 Sobic010G240500 Sobic003G234101--Sobic010G240500 Sobic003G435100 Sobic003G435100 Sobic003G234101--Sobic003G435100 Sobic003G234101--Sobic006G249400 Sobic010G240600 Sobic010G240600 Sobic003G234101--Sobic010G240600 Sobic007G075700--Sobic010G240700 Sobic007G075700--Sobic003G234101 Sobic007G075700--Sobic010G240600 Sobic007G075700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic007G075700--Sobic007G009600 Sobic002G416950 Sobic002G416950 Sobic007G075700--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic007G075700--Sobic007G170800 Sobic003G191000 Sobic003G191000 Sobic007G075700--Sobic003G191000 Sobic004G060700 Sobic004G060700 Sobic007G075700--Sobic004G060700 Sobic005G218600--Sobic005G218201 Sobic004G038300 Sobic004G038300 Sobic005G218600--Sobic004G038300 Sobic001G255300 Sobic001G255300 Sobic005G218600--Sobic001G255300 Sobic001G379300 Sobic001G379300 Sobic005G218600--Sobic001G379300 Sobic006G238100 Sobic006G238100 Sobic005G218600--Sobic006G238100 Sobic005G218600--Sobic004G044200 Sobic002G209800 Sobic002G209800 Sobic005G218600--Sobic002G209800 Sobic008G163200 Sobic008G163200 Sobic005G218600--Sobic008G163200 Sobic003G068300 Sobic003G068300 Sobic005G218600--Sobic003G068300 Sobic004G309300--Sobic006G249400 Sobic004G312800 Sobic004G312800 Sobic004G309300--Sobic004G312800 Sobic003G229600 Sobic003G229600 Sobic004G309300--Sobic003G229600 Sobic001G295300 Sobic001G295300 Sobic004G309300--Sobic001G295300 Sobic003G008900 Sobic003G008900 Sobic004G309300--Sobic003G008900 Sobic004G028200 Sobic004G028200 Sobic004G309300--Sobic004G028200 Sobic003G022300 Sobic003G022300 Sobic004G309300--Sobic003G022300 Sobic009G210200 Sobic009G210200 Sobic004G309300--Sobic009G210200 Sobic001G134800 Sobic001G134800 Sobic004G309300--Sobic001G134800 Sobic008G072600 Sobic008G072600 Sobic006G256200--Sobic008G072600 Sobic009G221900 Sobic009G221900 Sobic006G256200--Sobic009G221900 Sobic008G091557 Sobic008G091557 Sobic006G256200--Sobic008G091557 Sobic009G017500 Sobic009G017500 Sobic006G256200--Sobic009G017500 Sobic006G256200--Sobic006G249400 Sobic002G083600 Sobic002G083600 Sobic006G256200--Sobic002G083600 Sobic001G208600 Sobic001G208600 Sobic006G256200--Sobic001G208600 Sobic005G071800 Sobic005G071800 Sobic006G256200--Sobic005G071800 Sobic005G115600 Sobic005G115600 Sobic006G256200--Sobic005G115600 Sobic003G114200 Sobic003G114200 Sobic005G218700--Sobic003G114200 Sobic008G189500 Sobic008G189500 Sobic005G218700--Sobic008G189500 Sobic005G218700--Sobic005G218600 Sobic001G472000 Sobic001G472000 Sobic005G218700--Sobic001G472000 Sobic005G218700--Sobic001G255300 Sobic005G218700--Sobic003G068300 Sobic005G218700--Sobic008G163200 Sobic009G070600 Sobic009G070600 Sobic005G218700--Sobic009G070600 Sobic005G218700--Sobic007G170800 Sobic006G033800--Sobic004G044200 Sobic006G033800--Sobic006G249400 Sobic001G065500 Sobic001G065500 Sobic006G033800--Sobic001G065500 Sobic004G193400 Sobic004G193400 Sobic006G033800--Sobic004G193400 Sobic006G033800--Sobic001G472000 Sobic003G150600 Sobic003G150600 Sobic006G033800--Sobic003G150600 Sobic006G033800--Sobic003G328200 Sobic008G117400 Sobic008G117400 Sobic006G033800--Sobic008G117400 Sobic006G280050 Sobic006G280050 Sobic006G033800--Sobic006G280050 Sobic001G012200 Sobic001G012200 Sobic001G012600--Sobic001G012200 Sobic001G334900 Sobic001G334900 Sobic001G012600--Sobic001G334900 Sobic001G012300 Sobic001G012300 Sobic001G012600--Sobic001G012300 Sobic002G347300 Sobic002G347300 Sobic001G012600--Sobic002G347300 Sobic001G012400 Sobic001G012400 Sobic001G012600--Sobic001G012400 Sobic001G012500 Sobic001G012500 Sobic001G012600--Sobic001G012500 Sobic009G232200 Sobic009G232200 Sobic001G012600--Sobic009G232200 Sobic001G345900 Sobic001G345900 Sobic001G012600--Sobic001G345900 Sobic004G257700 Sobic004G257700 Sobic001G012600--Sobic004G257700
Octagon: transcription factors


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