Gene annotation
Transcriptome id Sobic.007G075700.1,Sobic.007G075700.2
Synonym Sb07g006060, ATIRT1, IRT1
Functional annotation metal cation transporter, putative, expressed
UniProt A0A1B6PGB0 , C5YIK1
Pfam PF02535
Panther DB PTHR11040 PTHR11040:SF65
NCBI CDD KOG1558; Fe2+/Zn2+ regulated transporter
KEGG Orthology K14709; SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G12750 : zinc transporter 1 precursor
RAP-DB (Rice) LOC_Os04g52310.1 : metal cation transporter, putative, expressed
MaizeGDB (Corn) Zm00025a029914
Brachypodium KQK20303 , KQJ95581
Barley -
Wheat TraesCS1D02G293900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G240700 PPR repeat containing protein, expressed -
2 Sobic.003G234101 - -
3 Sobic.010G240600 - -
4 Sobic.010G240500 cadmium/zinc-transporting ATPase, putative, expressed -
5 Sobic.007G009600 expressed protein -
6 Sobic.002G416950 - -
7 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
8 Sobic.003G191000 FAD dependent oxidoreductase domain containing protein, expressed K03146: THI4, cysteine-dependent adenosine diphosphate thiazole synthase
9 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
10 Sobic.001G379300 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.001G541300 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.010G052300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBL28 - F-box domain and LRR containing protein, expressed -
13 Sobic.005G218600 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
15 Sobic.007G069500 expressed protein -
16 Sobic.002G141100 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.003G114200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
18 Sobic.005G200600 dirigent, putative, expressed -
19 Sobic.007G127600 transferase family protein, putative, expressed -
20 Sobic.003G317800 lysM domain containing protein, putative -


Gene co-expression network
sample Sobic007G075700 Sobic007G075700 Sobic010G240700 Sobic010G240700 Sobic007G075700--Sobic010G240700 Sobic003G234101 Sobic003G234101 Sobic007G075700--Sobic003G234101 Sobic010G240600 Sobic010G240600 Sobic007G075700--Sobic010G240600 Sobic010G240500 Sobic010G240500 Sobic007G075700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic007G075700--Sobic007G009600 Sobic002G416950 Sobic002G416950 Sobic007G075700--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic007G075700--Sobic007G170800 Sobic003G191000 Sobic003G191000 Sobic007G075700--Sobic003G191000 Sobic004G060700 Sobic004G060700 Sobic007G075700--Sobic004G060700 Sobic010G240700--Sobic010G240600 Sobic010G240700--Sobic007G075700 Sobic010G240700--Sobic010G240500 Sobic010G240700--Sobic007G009600 Sobic007G069500 Sobic007G069500 Sobic010G240700--Sobic007G069500 Sobic001G379300 Sobic001G379300 Sobic010G240700--Sobic001G379300 Sobic010G240700--Sobic002G416950 Sobic010G240700--Sobic004G060700 Sobic010G240700--Sobic007G170800 Sobic003G234101--Sobic007G075700 Sobic010G052300 Sobic010G052300 Sobic003G234101--Sobic010G052300 Sobic003G234101--Sobic010G240700 Sobic001G343400 Sobic001G343400 Sobic003G234101--Sobic001G343400 Sobic010G171300 Sobic010G171300 Sobic003G234101--Sobic010G171300 Sobic003G234101--Sobic010G240500 Sobic003G435100 Sobic003G435100 Sobic003G234101--Sobic003G435100 Sobic006G249400 Sobic006G249400 Sobic003G234101--Sobic006G249400 Sobic003G234101--Sobic010G240600 Sobic010G240600--Sobic007G009600 Sobic010G240600--Sobic010G240700 Sobic010G240600--Sobic007G170800 Sobic010G240600--Sobic002G416950 Sobic010G240600--Sobic004G060700 Sobic010G240600--Sobic001G379300 Sobic010G240600--Sobic007G075700 Sobic001G541300 Sobic001G541300 Sobic010G240600--Sobic001G541300 Sobic010G240600--Sobic007G069500 Sobic010G240500--Sobic007G075700 Sobic010G240500--Sobic010G240700 Sobic010G240500--Sobic010G240600 Sobic003G292300 Sobic003G292300 Sobic010G240500--Sobic003G292300 Sobic010G240500--Sobic007G170800 Sobic010G240500--Sobic003G234101 Sobic002G297900 Sobic002G297900 Sobic010G240500--Sobic002G297900 Sobic010G240500--Sobic004G060700 Sobic001G366500 Sobic001G366500 Sobic010G240500--Sobic001G366500 Sobic007G009600--Sobic004G060700 Sobic007G009600--Sobic002G416950 Sobic007G009600--Sobic007G170800 Sobic007G009600--Sobic001G379300 Sobic006G238100 Sobic006G238100 Sobic007G009600--Sobic006G238100 Sobic008G163200 Sobic008G163200 Sobic007G009600--Sobic008G163200 Sobic002G415300 Sobic002G415300 Sobic007G009600--Sobic002G415300 Sobic001G435600 Sobic001G435600 Sobic007G009600--Sobic001G435600 Sobic002G415400 Sobic002G415400 Sobic007G009600--Sobic002G415400 Sobic002G416950--Sobic004G060700 Sobic002G416950--Sobic001G379300 Sobic002G416950--Sobic002G415300 Sobic002G416950--Sobic006G238100 Sobic002G416950--Sobic007G009600 Sobic002G416950--Sobic001G435600 Sobic002G416950--Sobic008G163200 Sobic002G416950--Sobic007G170800 Sobic002G416950--Sobic002G415400 Sobic007G170800--Sobic004G060700 Sobic003G114200 Sobic003G114200 Sobic007G170800--Sobic003G114200 Sobic007G170800--Sobic007G009600 Sobic007G170800--Sobic002G416950 Sobic007G170800--Sobic008G163200 Sobic007G170800--Sobic001G435600 Sobic007G170800--Sobic002G415300 Sobic007G170800--Sobic001G541300 Sobic007G170800--Sobic001G379300 Sobic003G191000--Sobic007G075700 Sobic001G170900 Sobic001G170900 Sobic003G191000--Sobic001G170900 Sobic005G056201 Sobic005G056201 Sobic003G191000--Sobic005G056201 Sobic003G191000--Sobic003G234101 Sobic003G191000--Sobic007G009600 Sobic009G161100 Sobic009G161100 Sobic003G191000--Sobic009G161100 Sobic008G123600 Sobic008G123600 Sobic003G191000--Sobic008G123600 Sobic003G110100 Sobic003G110100 Sobic003G191000--Sobic003G110100 Sobic005G200600 Sobic005G200600 Sobic003G191000--Sobic005G200600 Sobic004G060700--Sobic002G416950 Sobic004G060700--Sobic002G415300 Sobic004G060700--Sobic007G170800 Sobic004G060700--Sobic007G009600 Sobic004G060700--Sobic008G163200 Sobic004G060700--Sobic002G415400 Sobic004G060700--Sobic001G435600 Sobic004G060700--Sobic006G238100 Sobic004G060700--Sobic001G379300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.