Gene annotation
Transcriptome id Sobic.010G240700.1
Synonym Sb10g028090
Functional annotation PPR repeat containing protein, expressed
UniProt A0A194YL49
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF446
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65560 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g47570.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a029050
Brachypodium KQK17266
Barley HORVU7Hr1G099910.15 , HORVU7Hr1G099910.14 , HORVU7Hr1G099910.17 , HORVU7Hr1G099910.16 , HORVU7Hr1G099910.11 , HORVU7Hr1G099910.10 , HORVU7Hr1G099910.13 , HORVU7Hr1G099910.12 , HORVU7Hr1G099910.18 , HORVU7Hr1G099910.1 , HORVU7Hr1G099910.3 , HORVU7Hr1G099910.2 , HORVU7Hr1G099910.5 , HORVU7Hr1G099910.4 , HORVU7Hr1G099910.7 , HORVU7Hr1G099910.6 , HORVU7Hr1G099910.9 , HORVU7Hr1G099910.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G240600 - -
2 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
3 Sobic.010G240500 cadmium/zinc-transporting ATPase, putative, expressed -
4 Sobic.007G009600 expressed protein -
5 Sobic.007G069500 expressed protein -
6 Sobic.001G379300 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.002G416950 - -
8 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
9 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
10 Sobic.005G200600 dirigent, putative, expressed -
11 Sobic.001G541300 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.006G238100 LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.003G234101 - -
14 Sobic.003G317800 lysM domain containing protein, putative -
15 Sobic.002G128600 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
16 Sobic.005G218600 NBS-LRR disease resistance protein, putative, expressed -
17 Sobic.002G141100 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
19 Sobic.003G058600 cytochrome P450, putative, expressed -
20 Sobic.004G249400 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase


Gene co-expression network
sample Sobic010G240700 Sobic010G240700 Sobic010G240600 Sobic010G240600 Sobic010G240700--Sobic010G240600 Sobic007G075700 Sobic007G075700 Sobic010G240700--Sobic007G075700 Sobic010G240500 Sobic010G240500 Sobic010G240700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic010G240700--Sobic007G009600 Sobic007G069500 Sobic007G069500 Sobic010G240700--Sobic007G069500 Sobic001G379300 Sobic001G379300 Sobic010G240700--Sobic001G379300 Sobic002G416950 Sobic002G416950 Sobic010G240700--Sobic002G416950 Sobic004G060700 Sobic004G060700 Sobic010G240700--Sobic004G060700 Sobic007G170800 Sobic007G170800 Sobic010G240700--Sobic007G170800 Sobic010G240600--Sobic007G009600 Sobic010G240600--Sobic010G240700 Sobic010G240600--Sobic007G170800 Sobic010G240600--Sobic002G416950 Sobic010G240600--Sobic004G060700 Sobic010G240600--Sobic001G379300 Sobic010G240600--Sobic007G075700 Sobic001G541300 Sobic001G541300 Sobic010G240600--Sobic001G541300 Sobic010G240600--Sobic007G069500 Sobic007G075700--Sobic010G240700 Sobic003G234101 Sobic003G234101 Sobic007G075700--Sobic003G234101 Sobic007G075700--Sobic010G240600 Sobic007G075700--Sobic010G240500 Sobic007G075700--Sobic007G009600 Sobic007G075700--Sobic002G416950 Sobic007G075700--Sobic007G170800 Sobic003G191000 Sobic003G191000 Sobic007G075700--Sobic003G191000 Sobic007G075700--Sobic004G060700 Sobic010G240500--Sobic007G075700 Sobic010G240500--Sobic010G240700 Sobic010G240500--Sobic010G240600 Sobic003G292300 Sobic003G292300 Sobic010G240500--Sobic003G292300 Sobic010G240500--Sobic007G170800 Sobic010G240500--Sobic003G234101 Sobic002G297900 Sobic002G297900 Sobic010G240500--Sobic002G297900 Sobic010G240500--Sobic004G060700 Sobic001G366500 Sobic001G366500 Sobic010G240500--Sobic001G366500 Sobic007G009600--Sobic004G060700 Sobic007G009600--Sobic002G416950 Sobic007G009600--Sobic007G170800 Sobic007G009600--Sobic001G379300 Sobic006G238100 Sobic006G238100 Sobic007G009600--Sobic006G238100 Sobic008G163200 Sobic008G163200 Sobic007G009600--Sobic008G163200 Sobic002G415300 Sobic002G415300 Sobic007G009600--Sobic002G415300 Sobic001G435600 Sobic001G435600 Sobic007G009600--Sobic001G435600 Sobic002G415400 Sobic002G415400 Sobic007G009600--Sobic002G415400 Sobic002G128600 Sobic002G128600 Sobic007G069500--Sobic002G128600 Sobic007G069500--Sobic001G379300 Sobic006G227000 Sobic006G227000 Sobic007G069500--Sobic006G227000 Sobic003G317800 Sobic003G317800 Sobic007G069500--Sobic003G317800 Sobic001G255300 Sobic001G255300 Sobic007G069500--Sobic001G255300 Sobic005G029400 Sobic005G029400 Sobic007G069500--Sobic005G029400 Sobic007G069500--Sobic006G238100 Sobic004G328900 Sobic004G328900 Sobic007G069500--Sobic004G328900 Sobic006G253900 Sobic006G253900 Sobic007G069500--Sobic006G253900 Sobic001G379300--Sobic006G238100 Sobic001G379300--Sobic002G416950 Sobic001G379300--Sobic001G255300 Sobic001G379300--Sobic004G328900 Sobic001G379300--Sobic003G317800 Sobic001G379300--Sobic004G060700 Sobic001G379300--Sobic007G009600 Sobic001G379300--Sobic008G163200 Sobic001G379300--Sobic007G069500 Sobic002G416950--Sobic004G060700 Sobic002G416950--Sobic001G379300 Sobic002G416950--Sobic002G415300 Sobic002G416950--Sobic006G238100 Sobic002G416950--Sobic007G009600 Sobic002G416950--Sobic001G435600 Sobic002G416950--Sobic008G163200 Sobic002G416950--Sobic007G170800 Sobic002G416950--Sobic002G415400 Sobic004G060700--Sobic002G416950 Sobic004G060700--Sobic002G415300 Sobic004G060700--Sobic007G170800 Sobic004G060700--Sobic007G009600 Sobic004G060700--Sobic008G163200 Sobic004G060700--Sobic002G415400 Sobic004G060700--Sobic001G435600 Sobic004G060700--Sobic006G238100 Sobic004G060700--Sobic001G379300 Sobic007G170800--Sobic004G060700 Sobic003G114200 Sobic003G114200 Sobic007G170800--Sobic003G114200 Sobic007G170800--Sobic007G009600 Sobic007G170800--Sobic002G416950 Sobic007G170800--Sobic008G163200 Sobic007G170800--Sobic001G435600 Sobic007G170800--Sobic002G415300 Sobic007G170800--Sobic001G541300 Sobic007G170800--Sobic001G379300
Octagon: transcription factors


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