Gene annotation
Transcriptome id Sobic.010G240500.3,Sobic.010G240500.2,Sobic.010G240500.4,Sobic.010G240500.5
Synonym HMA1, Sb10g028080, ATHMA1
Functional annotation cadmium/zinc-transporting ATPase, putative, expressed
UniProt A0A194YL74 , A0A1W0VUK6 , A0A1W0VUH3
Pfam PF12710 PF00122 PF00702 PF00122
Panther DB PTHR24093 PTHR24093:SF272
NCBI CDD KOG0202; Ca2+ transporting ATPase
KEGG Orthology -
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G37270 : heavy metal atpase 1
RAP-DB (Rice) LOC_Os06g47550.1 : cadmium/zinc-transporting ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a023468 , Zm00025a018253
Brachypodium KQK17265
Barley HORVU7Hr1G100160.8 , HORVU5Hr1G066370.31 , HORVU5Hr1G066370.30 , HORVU5Hr1G066370.9 , HORVU5Hr1G066370.8 , HORVU5Hr1G066370.5 , HORVU5Hr1G066370.4 , HORVU5Hr1G066370.7 , HORVU5Hr1G066370.6 , HORVU5Hr1G066370.1 , HORVU5Hr1G066370.3 , HORVU5Hr1G066370.2 , HORVU5Hr1G066370.26 , HORVU5Hr1G066370.27 , HORVU5Hr1G066370.20 , HORVU5Hr1G066370.21 , HORVU5Hr1G066370.22 , HORVU5Hr1G066370.23 , HORVU5Hr1G066370.11 , HORVU5Hr1G066370.10 , HORVU5Hr1G066370.12 , HORVU5Hr1G066370.16 , HORVU7Hr1G100160.5 , HORVU7Hr1G100160.4 , HORVU7Hr1G100160.7 , HORVU7Hr1G100160.6 , HORVU7Hr1G100160.1 , HORVU7Hr1G100160.3 , HORVU7Hr1G100160.2 , HORVU5Hr1G066370.19 , HORVU5Hr1G066370.18 , HORVU5Hr1G066370.13 , HORVU5Hr1G066370.15 , HORVU5Hr1G066370.14 , HORVU5Hr1G066370.17 , HORVU5Hr1G066370.24 , HORVU5Hr1G066370.25 , HORVU5Hr1G066370.28 , HORVU5Hr1G066370.29
Wheat TraesCS7A02G439100 , TraesCS7B02G337700 , TraesCS7B02G337700 , TraesCS7D02G428700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G240500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
2 Sobic.010G240700 PPR repeat containing protein, expressed -
3 Sobic.010G240600 - -
4 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
5 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
6 Sobic.003G234101 - -
7 Sobic.002G297900 CDGSH iron sulfur domain-containing protein 1, putative, expressed -
8 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
9 Sobic.001G366500 cytochrome P450, putative, expressed -
10 Sobic.007G009600 expressed protein -
11 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -
12 Sobic.002G416950 - -
13 Sobic.003G096100 auxin-induced protein 5NG4, putative, expressed -
14 Sobic.001G435600 - -
15 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
16 Sobic.003G058600 cytochrome P450, putative, expressed -
17 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
19 Sobic.002G267900 expressed protein -
20 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase


Gene co-expression network
sample Sobic010G240500 Sobic010G240500 Sobic007G075700 Sobic007G075700 Sobic010G240500--Sobic007G075700 Sobic010G240700 Sobic010G240700 Sobic010G240500--Sobic010G240700 Sobic010G240600 Sobic010G240600 Sobic010G240500--Sobic010G240600 Sobic003G292300 Sobic003G292300 Sobic010G240500--Sobic003G292300 Sobic007G170800 Sobic007G170800 Sobic010G240500--Sobic007G170800 Sobic003G234101 Sobic003G234101 Sobic010G240500--Sobic003G234101 Sobic002G297900 Sobic002G297900 Sobic010G240500--Sobic002G297900 Sobic004G060700 Sobic004G060700 Sobic010G240500--Sobic004G060700 Sobic001G366500 Sobic001G366500 Sobic010G240500--Sobic001G366500 Sobic007G075700--Sobic010G240700 Sobic007G075700--Sobic003G234101 Sobic007G075700--Sobic010G240600 Sobic007G075700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic007G075700--Sobic007G009600 Sobic002G416950 Sobic002G416950 Sobic007G075700--Sobic002G416950 Sobic007G075700--Sobic007G170800 Sobic003G191000 Sobic003G191000 Sobic007G075700--Sobic003G191000 Sobic007G075700--Sobic004G060700 Sobic010G240700--Sobic010G240600 Sobic010G240700--Sobic007G075700 Sobic010G240700--Sobic010G240500 Sobic010G240700--Sobic007G009600 Sobic007G069500 Sobic007G069500 Sobic010G240700--Sobic007G069500 Sobic001G379300 Sobic001G379300 Sobic010G240700--Sobic001G379300 Sobic010G240700--Sobic002G416950 Sobic010G240700--Sobic004G060700 Sobic010G240700--Sobic007G170800 Sobic010G240600--Sobic007G009600 Sobic010G240600--Sobic010G240700 Sobic010G240600--Sobic007G170800 Sobic010G240600--Sobic002G416950 Sobic010G240600--Sobic004G060700 Sobic010G240600--Sobic001G379300 Sobic010G240600--Sobic007G075700 Sobic001G541300 Sobic001G541300 Sobic010G240600--Sobic001G541300 Sobic010G240600--Sobic007G069500 Sobic005G110481 Sobic005G110481 Sobic003G292300--Sobic005G110481 Sobic001G069500 Sobic001G069500 Sobic003G292300--Sobic001G069500 Sobic010G011200 Sobic010G011200 Sobic003G292300--Sobic010G011200 Sobic007G090537 Sobic007G090537 Sobic003G292300--Sobic007G090537 Sobic009G001500 Sobic009G001500 Sobic003G292300--Sobic009G001500 Sobic003G295800 Sobic003G295800 Sobic003G292300--Sobic003G295800 Sobic003G225100 Sobic003G225100 Sobic003G292300--Sobic003G225100 Sobic003G383600 Sobic003G383600 Sobic003G292300--Sobic003G383600 Sobic007G013400 Sobic007G013400 Sobic003G292300--Sobic007G013400 Sobic007G170800--Sobic004G060700 Sobic003G114200 Sobic003G114200 Sobic007G170800--Sobic003G114200 Sobic007G170800--Sobic007G009600 Sobic007G170800--Sobic002G416950 Sobic008G163200 Sobic008G163200 Sobic007G170800--Sobic008G163200 Sobic001G435600 Sobic001G435600 Sobic007G170800--Sobic001G435600 Sobic002G415300 Sobic002G415300 Sobic007G170800--Sobic002G415300 Sobic007G170800--Sobic001G541300 Sobic007G170800--Sobic001G379300 Sobic003G234101--Sobic007G075700 Sobic010G052300 Sobic010G052300 Sobic003G234101--Sobic010G052300 Sobic003G234101--Sobic010G240700 Sobic001G343400 Sobic001G343400 Sobic003G234101--Sobic001G343400 Sobic010G171300 Sobic010G171300 Sobic003G234101--Sobic010G171300 Sobic003G234101--Sobic010G240500 Sobic003G435100 Sobic003G435100 Sobic003G234101--Sobic003G435100 Sobic006G249400 Sobic006G249400 Sobic003G234101--Sobic006G249400 Sobic003G234101--Sobic010G240600 Sobic008G112300 Sobic008G112300 Sobic002G297900--Sobic008G112300 Sobic004G076000 Sobic004G076000 Sobic002G297900--Sobic004G076000 Sobic002G297900--Sobic003G295800 Sobic010G215500 Sobic010G215500 Sobic002G297900--Sobic010G215500 Sobic008G123600 Sobic008G123600 Sobic002G297900--Sobic008G123600 Sobic003G328200 Sobic003G328200 Sobic002G297900--Sobic003G328200 Sobic007G185100 Sobic007G185100 Sobic002G297900--Sobic007G185100 Sobic001G017000 Sobic001G017000 Sobic002G297900--Sobic001G017000 Sobic004G311100 Sobic004G311100 Sobic002G297900--Sobic004G311100 Sobic004G060700--Sobic002G416950 Sobic004G060700--Sobic002G415300 Sobic004G060700--Sobic007G170800 Sobic004G060700--Sobic007G009600 Sobic004G060700--Sobic008G163200 Sobic002G415400 Sobic002G415400 Sobic004G060700--Sobic002G415400 Sobic004G060700--Sobic001G435600 Sobic006G238100 Sobic006G238100 Sobic004G060700--Sobic006G238100 Sobic004G060700--Sobic001G379300 Sobic003G096100 Sobic003G096100 Sobic001G366500--Sobic003G096100 Sobic001G003600 Sobic001G003600 Sobic001G366500--Sobic001G003600 Sobic007G127600 Sobic007G127600 Sobic001G366500--Sobic007G127600 Sobic001G366500--Sobic007G170800 Sobic001G366500--Sobic001G435600 Sobic006G172700 Sobic006G172700 Sobic001G366500--Sobic006G172700 Sobic001G366500--Sobic004G060700 Sobic003G058600 Sobic003G058600 Sobic001G366500--Sobic003G058600 Sobic009G115050 Sobic009G115050 Sobic001G366500--Sobic009G115050
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.