Gene annotation
Transcriptome id Sobic.010G052300.1,Sobic.010G052300.2
Synonym Sb10g004550
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsFBL28 - F-box domain and LRR containing protein, expressed
UniProt A0A194YHE6 , C5Z4W4
Pfam PF12937
Panther DB PTHR24006
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G67140 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os06g07000.2,LOC_Os06g07000.1 : OsFBL28 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a049906
Brachypodium KQK19459 , KQK19460
Barley HORVU7Hr1G026770.7 , HORVU7Hr1G026770.6 , HORVU7Hr1G026770.5 , HORVU7Hr1G026770.4 , HORVU7Hr1G026770.3 , HORVU7Hr1G026770.2 , HORVU7Hr1G026770.1 , HORVU7Hr1G026770.9 , HORVU7Hr1G026770.8 , HORVU7Hr1G026760.1
Wheat TraesCS7A02G127700 , TraesCS7B02G027600 , TraesCS7B02G027600 , TraesCS7B02G027700 , TraesCS7D02G126300 , TraesCS7D02G126300 , TraesCS7A02G127700 , TraesCS7A02G127700 , TraesCS7A02G127800 , TraesCS7D02G126400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G052300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G234101 - -
2 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
3 Sobic.010G171300 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
4 Sobic.004G052401 - -
5 Sobic.006G161900 expressed protein K08331: autophagy-related protein 13
6 Sobic.009G073100 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
7 Sobic.010G240500 cadmium/zinc-transporting ATPase, putative, expressed -
8 Sobic.009G200400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
9 Sobic.001G343400 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
10 Sobic.004G193600 - -
11 Sobic.003G435100 expressed protein -
12 Sobic.006G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
13 Sobic.006G177800 Prolyl oligopeptidase family protein("PubMedID : 26759170,PubMedID : 24597475")@OsPOP9 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
14 Sobic.010G240600 - -
15 Sobic.002G083200 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
16 Sobic.003G110100 cysteine synthase, mitochondrial precursor, putative, expressed K01738: cysteine synthase
17 Sobic.010G240700 PPR repeat containing protein, expressed -
18 Sobic.001G358700 heavy metal-associated domain containing protein, expressed -
19 Sobic.003G191000 FAD dependent oxidoreductase domain containing protein, expressed K03146: THI4, cysteine-dependent adenosine diphosphate thiazole synthase
20 Sobic.007G009600 expressed protein -


Gene co-expression network
sample Sobic010G052300 Sobic010G052300 Sobic003G234101 Sobic003G234101 Sobic010G052300--Sobic003G234101 Sobic007G075700 Sobic007G075700 Sobic010G052300--Sobic007G075700 Sobic010G171300 Sobic010G171300 Sobic010G052300--Sobic010G171300 Sobic004G052401 Sobic004G052401 Sobic010G052300--Sobic004G052401 Sobic006G161900 Sobic006G161900 Sobic010G052300--Sobic006G161900 Sobic009G073100 Sobic009G073100 Sobic010G052300--Sobic009G073100 Sobic010G240500 Sobic010G240500 Sobic010G052300--Sobic010G240500 Sobic009G200400 Sobic009G200400 Sobic010G052300--Sobic009G200400 Sobic001G343400 Sobic001G343400 Sobic010G052300--Sobic001G343400 Sobic003G234101--Sobic007G075700 Sobic003G234101--Sobic010G052300 Sobic010G240700 Sobic010G240700 Sobic003G234101--Sobic010G240700 Sobic003G234101--Sobic001G343400 Sobic003G234101--Sobic010G171300 Sobic003G234101--Sobic010G240500 Sobic003G435100 Sobic003G435100 Sobic003G234101--Sobic003G435100 Sobic006G249400 Sobic006G249400 Sobic003G234101--Sobic006G249400 Sobic010G240600 Sobic010G240600 Sobic003G234101--Sobic010G240600 Sobic007G075700--Sobic010G240700 Sobic007G075700--Sobic003G234101 Sobic007G075700--Sobic010G240600 Sobic007G075700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic007G075700--Sobic007G009600 Sobic002G416950 Sobic002G416950 Sobic007G075700--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic007G075700--Sobic007G170800 Sobic003G191000 Sobic003G191000 Sobic007G075700--Sobic003G191000 Sobic004G060700 Sobic004G060700 Sobic007G075700--Sobic004G060700 Sobic010G171300--Sobic010G052300 Sobic010G171300--Sobic003G234101 Sobic010G171300--Sobic009G200400 Sobic010G171300--Sobic004G052401 Sobic006G256200 Sobic006G256200 Sobic010G171300--Sobic006G256200 Sobic010G171300--Sobic007G075700 Sobic010G171300--Sobic006G161900 Sobic010G171300--Sobic001G343400 Sobic005G004100 Sobic005G004100 Sobic010G171300--Sobic005G004100 Sobic004G052401--Sobic010G052300 Sobic004G052401--Sobic010G171300 Sobic004G052401--Sobic009G200400 Sobic005G093500 Sobic005G093500 Sobic004G052401--Sobic005G093500 Sobic002G041150 Sobic002G041150 Sobic004G052401--Sobic002G041150 Sobic004G052401--Sobic003G234101 Sobic004G052401--Sobic001G343400 Sobic004G052401--Sobic003G435100 Sobic004G052401--Sobic006G256200 Sobic006G161900--Sobic007G075700 Sobic006G161900--Sobic010G052300 Sobic001G376700 Sobic001G376700 Sobic006G161900--Sobic001G376700 Sobic006G161900--Sobic003G234101 Sobic006G161900--Sobic003G435100 Sobic004G193600 Sobic004G193600 Sobic006G161900--Sobic004G193600 Sobic006G161900--Sobic006G249400 Sobic004G296800 Sobic004G296800 Sobic006G161900--Sobic004G296800 Sobic006G161900--Sobic010G171300 Sobic007G208300 Sobic007G208300 Sobic009G073100--Sobic007G208300 Sobic004G055500 Sobic004G055500 Sobic009G073100--Sobic004G055500 Sobic002G083200 Sobic002G083200 Sobic009G073100--Sobic002G083200 Sobic005G084800 Sobic005G084800 Sobic009G073100--Sobic005G084800 Sobic009G073100--Sobic010G052300 Sobic001G531400 Sobic001G531400 Sobic009G073100--Sobic001G531400 Sobic004G301200 Sobic004G301200 Sobic009G073100--Sobic004G301200 Sobic001G295300 Sobic001G295300 Sobic009G073100--Sobic001G295300 Sobic002G128900 Sobic002G128900 Sobic009G073100--Sobic002G128900 Sobic010G240500--Sobic007G075700 Sobic010G240500--Sobic010G240700 Sobic010G240500--Sobic010G240600 Sobic003G292300 Sobic003G292300 Sobic010G240500--Sobic003G292300 Sobic010G240500--Sobic007G170800 Sobic010G240500--Sobic003G234101 Sobic002G297900 Sobic002G297900 Sobic010G240500--Sobic002G297900 Sobic010G240500--Sobic004G060700 Sobic001G366500 Sobic001G366500 Sobic010G240500--Sobic001G366500 Sobic009G200400--Sobic010G171300 Sobic009G200400--Sobic010G052300 Sobic009G200400--Sobic004G052401 Sobic009G200400--Sobic001G343400 Sobic009G200400--Sobic003G234101 Sobic003G371400 Sobic003G371400 Sobic009G200400--Sobic003G371400 Sobic009G200400--Sobic003G435100 Sobic001G358700 Sobic001G358700 Sobic009G200400--Sobic001G358700 Sobic009G200400--Sobic007G075700 Sobic001G343400--Sobic003G371400 Sobic001G343400--Sobic003G234101 Sobic004G290300 Sobic004G290300 Sobic001G343400--Sobic004G290300 Sobic001G140300 Sobic001G140300 Sobic001G343400--Sobic001G140300 Sobic005G112000 Sobic005G112000 Sobic001G343400--Sobic005G112000 Sobic005G145100 Sobic005G145100 Sobic001G343400--Sobic005G145100 Sobic001G388000 Sobic001G388000 Sobic001G343400--Sobic001G388000 Sobic001G343400--Sobic002G041150 Sobic008G055800 Sobic008G055800 Sobic001G343400--Sobic008G055800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.