Gene annotation
Transcriptome id Sobic.010G171300.5,Sobic.010G171300.6,Sobic.010G171300.4,Sobic.010G171300.1,Sobic.010G171300.3
Synonym Sb10g022390, ATZIP4, ZIP4
Functional annotation metal cation transporter, putative, expressed
UniProt A0A194YJQ7 , A0A1W0VTI2 , A0A194YJR5
Pfam PF02535
Panther DB PTHR11040 PTHR11040:SF52
NCBI CDD KOG1558; Fe2+/Zn2+ regulated transporter
KEGG Orthology K14709; SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G10970 : zinc transporter 4 precursor
RAP-DB (Rice) LOC_Os05g10940.1,LOC_Os06g37010.2 : metal cation transporter, putative, expressed
MaizeGDB (Corn) Zm00025a042302
Brachypodium KQK17937
Barley HORVU7Hr1G097270.6 , HORVU7Hr1G097270.7 , HORVU7Hr1G097270.2 , HORVU7Hr1G097270.3 , HORVU7Hr1G097270.1
Wheat TraesCS7A02G420200 , TraesCS7D02G412900 , TraesCS7B02G321200
Populus -


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cDNA sequences
Sobic.010G171300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G052300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBL28 - F-box domain and LRR containing protein, expressed -
2 Sobic.003G234101 - -
3 Sobic.009G200400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
4 Sobic.004G052401 - -
5 Sobic.006G256200 Myb-like DNA-binding domain containing protein, putative, expressed -
6 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
7 Sobic.006G161900 expressed protein K08331: autophagy-related protein 13
8 Sobic.001G343400 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
9 Sobic.005G004100 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
10 Sobic.003G435100 expressed protein -
11 Sobic.003G371400 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
12 Sobic.001G358700 heavy metal-associated domain containing protein, expressed -
13 Sobic.003G191000 FAD dependent oxidoreductase domain containing protein, expressed K03146: THI4, cysteine-dependent adenosine diphosphate thiazole synthase
14 Sobic.009G256000 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
15 Sobic.006G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
16 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
17 Sobic.001G208600 receptor kinase like protein, putative, expressed -
18 Sobic.005G071800 - -
19 Sobic.009G073100 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
20 Sobic.003G258800 glutamate synthase, chloroplast precursor, putative, expressed K00264: glutamate synthase (NADH)


Gene co-expression network
sample Sobic010G171300 Sobic010G171300 Sobic010G052300 Sobic010G052300 Sobic010G171300--Sobic010G052300 Sobic003G234101 Sobic003G234101 Sobic010G171300--Sobic003G234101 Sobic009G200400 Sobic009G200400 Sobic010G171300--Sobic009G200400 Sobic004G052401 Sobic004G052401 Sobic010G171300--Sobic004G052401 Sobic006G256200 Sobic006G256200 Sobic010G171300--Sobic006G256200 Sobic007G075700 Sobic007G075700 Sobic010G171300--Sobic007G075700 Sobic006G161900 Sobic006G161900 Sobic010G171300--Sobic006G161900 Sobic001G343400 Sobic001G343400 Sobic010G171300--Sobic001G343400 Sobic005G004100 Sobic005G004100 Sobic010G171300--Sobic005G004100 Sobic010G052300--Sobic003G234101 Sobic010G052300--Sobic007G075700 Sobic010G052300--Sobic010G171300 Sobic010G052300--Sobic004G052401 Sobic010G052300--Sobic006G161900 Sobic009G073100 Sobic009G073100 Sobic010G052300--Sobic009G073100 Sobic010G240500 Sobic010G240500 Sobic010G052300--Sobic010G240500 Sobic010G052300--Sobic009G200400 Sobic010G052300--Sobic001G343400 Sobic003G234101--Sobic007G075700 Sobic003G234101--Sobic010G052300 Sobic010G240700 Sobic010G240700 Sobic003G234101--Sobic010G240700 Sobic003G234101--Sobic001G343400 Sobic003G234101--Sobic010G171300 Sobic003G234101--Sobic010G240500 Sobic003G435100 Sobic003G435100 Sobic003G234101--Sobic003G435100 Sobic006G249400 Sobic006G249400 Sobic003G234101--Sobic006G249400 Sobic010G240600 Sobic010G240600 Sobic003G234101--Sobic010G240600 Sobic009G200400--Sobic010G171300 Sobic009G200400--Sobic010G052300 Sobic009G200400--Sobic004G052401 Sobic009G200400--Sobic001G343400 Sobic009G200400--Sobic003G234101 Sobic003G371400 Sobic003G371400 Sobic009G200400--Sobic003G371400 Sobic009G200400--Sobic003G435100 Sobic001G358700 Sobic001G358700 Sobic009G200400--Sobic001G358700 Sobic009G200400--Sobic007G075700 Sobic004G052401--Sobic010G052300 Sobic004G052401--Sobic010G171300 Sobic004G052401--Sobic009G200400 Sobic005G093500 Sobic005G093500 Sobic004G052401--Sobic005G093500 Sobic002G041150 Sobic002G041150 Sobic004G052401--Sobic002G041150 Sobic004G052401--Sobic003G234101 Sobic004G052401--Sobic001G343400 Sobic004G052401--Sobic003G435100 Sobic004G052401--Sobic006G256200 Sobic008G072600 Sobic008G072600 Sobic006G256200--Sobic008G072600 Sobic009G221900 Sobic009G221900 Sobic006G256200--Sobic009G221900 Sobic008G091557 Sobic008G091557 Sobic006G256200--Sobic008G091557 Sobic009G017500 Sobic009G017500 Sobic006G256200--Sobic009G017500 Sobic006G256200--Sobic006G249400 Sobic002G083600 Sobic002G083600 Sobic006G256200--Sobic002G083600 Sobic001G208600 Sobic001G208600 Sobic006G256200--Sobic001G208600 Sobic005G071800 Sobic005G071800 Sobic006G256200--Sobic005G071800 Sobic005G115600 Sobic005G115600 Sobic006G256200--Sobic005G115600 Sobic007G075700--Sobic010G240700 Sobic007G075700--Sobic003G234101 Sobic007G075700--Sobic010G240600 Sobic007G075700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic007G075700--Sobic007G009600 Sobic002G416950 Sobic002G416950 Sobic007G075700--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic007G075700--Sobic007G170800 Sobic003G191000 Sobic003G191000 Sobic007G075700--Sobic003G191000 Sobic004G060700 Sobic004G060700 Sobic007G075700--Sobic004G060700 Sobic006G161900--Sobic007G075700 Sobic006G161900--Sobic010G052300 Sobic001G376700 Sobic001G376700 Sobic006G161900--Sobic001G376700 Sobic006G161900--Sobic003G234101 Sobic006G161900--Sobic003G435100 Sobic004G193600 Sobic004G193600 Sobic006G161900--Sobic004G193600 Sobic006G161900--Sobic006G249400 Sobic004G296800 Sobic004G296800 Sobic006G161900--Sobic004G296800 Sobic006G161900--Sobic010G171300 Sobic001G343400--Sobic003G371400 Sobic001G343400--Sobic003G234101 Sobic004G290300 Sobic004G290300 Sobic001G343400--Sobic004G290300 Sobic001G140300 Sobic001G140300 Sobic001G343400--Sobic001G140300 Sobic005G112000 Sobic005G112000 Sobic001G343400--Sobic005G112000 Sobic005G145100 Sobic005G145100 Sobic001G343400--Sobic005G145100 Sobic001G388000 Sobic001G388000 Sobic001G343400--Sobic001G388000 Sobic001G343400--Sobic002G041150 Sobic008G055800 Sobic008G055800 Sobic001G343400--Sobic008G055800 Sobic009G256000 Sobic009G256000 Sobic005G004100--Sobic009G256000 Sobic004G060100 Sobic004G060100 Sobic005G004100--Sobic004G060100 Sobic004G283600 Sobic004G283600 Sobic005G004100--Sobic004G283600 Sobic005G018800 Sobic005G018800 Sobic005G004100--Sobic005G018800 Sobic007G161200 Sobic007G161200 Sobic005G004100--Sobic007G161200 Sobic008G021200 Sobic008G021200 Sobic005G004100--Sobic008G021200 Sobic008G004300 Sobic008G004300 Sobic005G004100--Sobic008G004300 Sobic002G301200 Sobic002G301200 Sobic005G004100--Sobic002G301200 Sobic002G410700 Sobic002G410700 Sobic005G004100--Sobic002G410700
Octagon: transcription factors


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