Gene annotation
Transcriptome id Sobic.003G258800.1
Synonym GLT1, Sb03g031310
Functional annotation glutamate synthase, chloroplast precursor, putative, expressed
UniProt C5XGS0
Pfam PF14691 PF07992 PF01493 PF04898 PF01645 PF00310
Panther DB PTHR11938 PTHR11938:SF109
NCBI CDD -
KEGG Orthology K00264; glutamate synthase (NADH)
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process GO:0015930glutamate synthase activity GO:0006807nitrogen compound metabolic process GO:0016638oxidoreductase activity, acting on the CH-NH2 group of donors GO:0006537glutamate biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G53460 : NADH-dependent glutamate synthase 1
RAP-DB (Rice) LOC_Os01g48960.1 : glutamate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a042520 , Zm00025a009788 , Zm00025a051630 , Zm00025a052604 , Zm00025a044495 , Zm00025a047871 , Zm00025a047870 , Zm00025a031184 , Zm00025a028023 , Zm00025a038839
Brachypodium KQK04984 , KQK09208
Barley HORVU3Hr1G063050.5 , HORVU3Hr1G063050.15 , HORVU3Hr1G063050.14 , HORVU3Hr1G063050.11 , HORVU3Hr1G063050.10 , HORVU3Hr1G063050.13 , HORVU3Hr1G063050.12 , HORVU3Hr1G063050.9 , HORVU3Hr1G063050.1 , HORVU3Hr1G063050.3 , HORVU3Hr1G063050.2 , HORVU3Hr1G063050.4 , HORVU3Hr1G063050.7 , HORVU3Hr1G063050.6
Wheat TraesCS3D02G266400 , TraesCS3D02G266400 , TraesCS3B02G299800 , TraesCS3A02G266300 , TraesCS3A02G266300
Populus PNS99919 , PNS99918 , PNS99917 , PNS99922 , PNS99920 , PNS99921 , PNT08847 , PNT08848


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G115600 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
2 Sobic.005G071800 - -
3 Sobic.002G083600 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
4 Sobic.010G055100 OsWAK63 - OsWAK receptor-like protein kinase, expressed -
5 Sobic.006G256200 Myb-like DNA-binding domain containing protein, putative, expressed -
6 Sobic.002G383900 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
7 Sobic.006G030800 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
8 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
9 Sobic.008G072600 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
10 Sobic.001G365200 aminotransferase domain containing protein, putative, expressed -
11 Sobic.005G093500 expressed protein -
12 Sobic.001G243100 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
13 Sobic.003G053700 growth regulator related protein, putative, expressed -
14 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
15 Sobic.001G263900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
16 Sobic.002G194600 integral membrane protein, putative, expressed -
17 Sobic.007G119500 expressed protein -
18 Sobic.003G371400 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
19 Sobic.004G075800 chloride channel protein, putative, expressed K05016: chloride channel 7
20 Sobic.007G190100 transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit


Gene co-expression network
sample Sobic003G258800 Sobic003G258800 Sobic005G115600 Sobic005G115600 Sobic003G258800--Sobic005G115600 Sobic005G071800 Sobic005G071800 Sobic003G258800--Sobic005G071800 Sobic002G083600 Sobic002G083600 Sobic003G258800--Sobic002G083600 Sobic010G055100 Sobic010G055100 Sobic003G258800--Sobic010G055100 Sobic006G256200 Sobic006G256200 Sobic003G258800--Sobic006G256200 Sobic002G383900 Sobic002G383900 Sobic003G258800--Sobic002G383900 Sobic006G030800 Sobic006G030800 Sobic003G258800--Sobic006G030800 Sobic005G110541 Sobic005G110541 Sobic003G258800--Sobic005G110541 Sobic008G072600 Sobic008G072600 Sobic003G258800--Sobic008G072600 Sobic005G115600--Sobic006G030800 Sobic009G017500 Sobic009G017500 Sobic005G115600--Sobic009G017500 Sobic003G279800 Sobic003G279800 Sobic005G115600--Sobic003G279800 Sobic005G115600--Sobic002G383900 Sobic003G157700 Sobic003G157700 Sobic005G115600--Sobic003G157700 Sobic005G115600--Sobic002G083600 Sobic005G115600--Sobic006G256200 Sobic005G115600--Sobic003G258800 Sobic003G105000 Sobic003G105000 Sobic005G115600--Sobic003G105000 Sobic005G012800 Sobic005G012800 Sobic005G071800--Sobic005G012800 Sobic005G093500 Sobic005G093500 Sobic005G071800--Sobic005G093500 Sobic009G063400 Sobic009G063400 Sobic005G071800--Sobic009G063400 Sobic001G196000 Sobic001G196000 Sobic005G071800--Sobic001G196000 Sobic005G071800--Sobic006G256200 Sobic010G096100 Sobic010G096100 Sobic005G071800--Sobic010G096100 Sobic002G064600 Sobic002G064600 Sobic005G071800--Sobic002G064600 Sobic005G071800--Sobic003G258800 Sobic005G071800--Sobic002G083600 Sobic003G371400 Sobic003G371400 Sobic002G083600--Sobic003G371400 Sobic005G112000 Sobic005G112000 Sobic002G083600--Sobic005G112000 Sobic009G221900 Sobic009G221900 Sobic002G083600--Sobic009G221900 Sobic001G402400 Sobic001G402400 Sobic002G083600--Sobic001G402400 Sobic007G064900 Sobic007G064900 Sobic002G083600--Sobic007G064900 Sobic002G207000 Sobic002G207000 Sobic002G083600--Sobic002G207000 Sobic010G234300 Sobic010G234300 Sobic002G083600--Sobic010G234300 Sobic002G083600--Sobic005G012800 Sobic001G365200 Sobic001G365200 Sobic002G083600--Sobic001G365200 Sobic010G055100--Sobic005G110541 Sobic007G097550 Sobic007G097550 Sobic010G055100--Sobic007G097550 Sobic005G212800 Sobic005G212800 Sobic010G055100--Sobic005G212800 Sobic002G197000 Sobic002G197000 Sobic010G055100--Sobic002G197000 Sobic001G234100 Sobic001G234100 Sobic010G055100--Sobic001G234100 Sobic008G084800 Sobic008G084800 Sobic010G055100--Sobic008G084800 Sobic003G045650 Sobic003G045650 Sobic010G055100--Sobic003G045650 Sobic005G069332 Sobic005G069332 Sobic010G055100--Sobic005G069332 Sobic005G205400 Sobic005G205400 Sobic010G055100--Sobic005G205400 Sobic006G256200--Sobic008G072600 Sobic006G256200--Sobic009G221900 Sobic008G091557 Sobic008G091557 Sobic006G256200--Sobic008G091557 Sobic006G256200--Sobic009G017500 Sobic006G249400 Sobic006G249400 Sobic006G256200--Sobic006G249400 Sobic006G256200--Sobic002G083600 Sobic001G208600 Sobic001G208600 Sobic006G256200--Sobic001G208600 Sobic006G256200--Sobic005G071800 Sobic006G256200--Sobic005G115600 Sobic004G161900 Sobic004G161900 Sobic002G383900--Sobic004G161900 Sobic001G263900 Sobic001G263900 Sobic002G383900--Sobic001G263900 Sobic007G020700 Sobic007G020700 Sobic002G383900--Sobic007G020700 Sobic005G022500 Sobic005G022500 Sobic002G383900--Sobic005G022500 Sobic005G219700 Sobic005G219700 Sobic002G383900--Sobic005G219700 Sobic007G106500 Sobic007G106500 Sobic002G383900--Sobic007G106500 Sobic002G383900--Sobic001G365200 Sobic002G383900--Sobic002G207000 Sobic001G314000 Sobic001G314000 Sobic002G383900--Sobic001G314000 Sobic006G030800--Sobic005G115600 Sobic010G213600 Sobic010G213600 Sobic006G030800--Sobic010G213600 Sobic005G100800 Sobic005G100800 Sobic006G030800--Sobic005G100800 Sobic009G058400 Sobic009G058400 Sobic006G030800--Sobic009G058400 Sobic003G020500 Sobic003G020500 Sobic006G030800--Sobic003G020500 Sobic004G008600 Sobic004G008600 Sobic006G030800--Sobic004G008600 Sobic005G134200 Sobic005G134200 Sobic006G030800--Sobic005G134200 Sobic001G218500 Sobic001G218500 Sobic006G030800--Sobic001G218500 Sobic009G060700 Sobic009G060700 Sobic006G030800--Sobic009G060700 Sobic005G110541--Sobic005G100800 Sobic007G193200 Sobic007G193200 Sobic005G110541--Sobic007G193200 Sobic001G353200 Sobic001G353200 Sobic005G110541--Sobic001G353200 Sobic010G187500 Sobic010G187500 Sobic005G110541--Sobic010G187500 Sobic004G261500 Sobic004G261500 Sobic005G110541--Sobic004G261500 Sobic001G443100 Sobic001G443100 Sobic005G110541--Sobic001G443100 Sobic007G212000 Sobic007G212000 Sobic005G110541--Sobic007G212000 Sobic001G243100 Sobic001G243100 Sobic005G110541--Sobic001G243100 Sobic004G299500 Sobic004G299500 Sobic005G110541--Sobic004G299500 Sobic008G072600--Sobic006G256200 Sobic008G072600--Sobic009G017500 Sobic008G072600--Sobic008G091557 Sobic008G072600--Sobic009G221900 Sobic008G072600--Sobic009G063400 Sobic005G107500 Sobic005G107500 Sobic008G072600--Sobic005G107500 Sobic007G038600 Sobic007G038600 Sobic008G072600--Sobic007G038600 Sobic008G072600--Sobic001G263900 Sobic008G072600--Sobic010G096100
Octagon: transcription factors


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