Gene annotation
Transcriptome id Sobic.002G194600.1
Synonym Sb02g024130, VIT1, ATVIT1
Functional annotation integral membrane protein, putative, expressed
UniProt C5XC44
Pfam PF01988
Panther DB PTHR31851 PTHR31851:SF8
NCBI CDD KOG4473; Uncharacterized membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01770 : vacuolar iron transporter 1
RAP-DB (Rice) LOC_Os09g23300.1 : integral membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a056228 , Zm00025a046890 , Zm00025a013866
Brachypodium KQJ90140
Barley HORVU5Hr1G060370.2 , HORVU5Hr1G060370.1 , HORVU4Hr1G031840.1
Wheat TraesCS5D02G209900 , TraesCS5D02G209900 , TraesCS5B02G202100 , TraesCS5A02G203400
Populus -


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cDNA sequences
Sobic.002G194600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G158900 chitinase 2, putative, expressed -
2 Sobic.008G055800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.010G155800 proteins of unknown function domain containing protein, expressed -
4 Sobic.005G100800 initiation factor 2 subunit family domain containing protein, expressed K08963: methylthioribose-1-phosphate isomerase
5 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -
6 Sobic.005G097900 major facilitator superfamily antiporter, putative, expressed -
7 Sobic.001G271300 expressed protein -
8 Sobic.010G152300 glycosyltransferase, putative, expressed -
9 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
10 Sobic.001G293100 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.007G064900 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
12 Sobic.005G219700 Leucine Rich Repeat family protein, expressed -
13 Sobic.006G236600 bHLH family protein, putative, expressed -
14 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
15 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
16 Sobic.002G409200 TKL_IRAK_DUF26-lh.9 - DUF26 kinases have homology to DUF26 containing loci, expressed -
17 Sobic.001G443100 Oxidoreductase superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.006G092100 no apical meristem protein, putative, expressed -
19 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
20 Sobic.003G255600 expressed protein -


Gene co-expression network
sample Sobic002G194600 Sobic002G194600 Sobic008G158900 Sobic008G158900 Sobic002G194600--Sobic008G158900 Sobic008G055800 Sobic008G055800 Sobic002G194600--Sobic008G055800 Sobic010G155800 Sobic010G155800 Sobic002G194600--Sobic010G155800 Sobic005G100800 Sobic005G100800 Sobic002G194600--Sobic005G100800 Sobic007G212000 Sobic007G212000 Sobic002G194600--Sobic007G212000 Sobic005G097900 Sobic005G097900 Sobic002G194600--Sobic005G097900 Sobic001G271300 Sobic001G271300 Sobic002G194600--Sobic001G271300 Sobic010G152300 Sobic010G152300 Sobic002G194600--Sobic010G152300 Sobic004G261500 Sobic004G261500 Sobic002G194600--Sobic004G261500 Sobic008G158900--Sobic002G194600 Sobic006G236600 Sobic006G236600 Sobic008G158900--Sobic006G236600 Sobic001G538932 Sobic001G538932 Sobic008G158900--Sobic001G538932 Sobic008G158900--Sobic010G155800 Sobic005G219700 Sobic005G219700 Sobic008G158900--Sobic005G219700 Sobic006G124200 Sobic006G124200 Sobic008G158900--Sobic006G124200 Sobic004G214300 Sobic004G214300 Sobic008G158900--Sobic004G214300 Sobic008G158900--Sobic008G055800 Sobic002G222600 Sobic002G222600 Sobic008G158900--Sobic002G222600 Sobic003G371400 Sobic003G371400 Sobic008G055800--Sobic003G371400 Sobic003G082700 Sobic003G082700 Sobic008G055800--Sobic003G082700 Sobic003G352700 Sobic003G352700 Sobic008G055800--Sobic003G352700 Sobic003G099166 Sobic003G099166 Sobic008G055800--Sobic003G099166 Sobic007G119500 Sobic007G119500 Sobic008G055800--Sobic007G119500 Sobic003G378800 Sobic003G378800 Sobic008G055800--Sobic003G378800 Sobic004G047600 Sobic004G047600 Sobic008G055800--Sobic004G047600 Sobic003G255600 Sobic003G255600 Sobic008G055800--Sobic003G255600 Sobic005G127200 Sobic005G127200 Sobic008G055800--Sobic005G127200 Sobic009G208700 Sobic009G208700 Sobic010G155800--Sobic009G208700 Sobic002G343100 Sobic002G343100 Sobic010G155800--Sobic002G343100 Sobic010G155800--Sobic003G255600 Sobic003G183300 Sobic003G183300 Sobic010G155800--Sobic003G183300 Sobic001G471800 Sobic001G471800 Sobic010G155800--Sobic001G471800 Sobic003G282300 Sobic003G282300 Sobic010G155800--Sobic003G282300 Sobic004G193500 Sobic004G193500 Sobic010G155800--Sobic004G193500 Sobic006G160900 Sobic006G160900 Sobic010G155800--Sobic006G160900 Sobic002G146000 Sobic002G146000 Sobic010G155800--Sobic002G146000 Sobic007G193200 Sobic007G193200 Sobic005G100800--Sobic007G193200 Sobic005G110541 Sobic005G110541 Sobic005G100800--Sobic005G110541 Sobic005G100800--Sobic004G261500 Sobic008G109400 Sobic008G109400 Sobic005G100800--Sobic008G109400 Sobic005G100800--Sobic001G271300 Sobic001G395900 Sobic001G395900 Sobic005G100800--Sobic001G395900 Sobic003G154500 Sobic003G154500 Sobic005G100800--Sobic003G154500 Sobic006G230200 Sobic006G230200 Sobic005G100800--Sobic006G230200 Sobic002G041100 Sobic002G041100 Sobic005G100800--Sobic002G041100 Sobic007G015000 Sobic007G015000 Sobic007G212000--Sobic007G015000 Sobic006G230100 Sobic006G230100 Sobic007G212000--Sobic006G230100 Sobic008G105800 Sobic008G105800 Sobic007G212000--Sobic008G105800 Sobic005G216400 Sobic005G216400 Sobic007G212000--Sobic005G216400 Sobic006G121000 Sobic006G121000 Sobic007G212000--Sobic006G121000 Sobic007G202480 Sobic007G202480 Sobic007G212000--Sobic007G202480 Sobic004G299500 Sobic004G299500 Sobic007G212000--Sobic004G299500 Sobic005G060200 Sobic005G060200 Sobic007G212000--Sobic005G060200 Sobic001G181600 Sobic001G181600 Sobic007G212000--Sobic001G181600 Sobic001G293100 Sobic001G293100 Sobic005G097900--Sobic001G293100 Sobic005G097900--Sobic007G015000 Sobic008G033100 Sobic008G033100 Sobic005G097900--Sobic008G033100 Sobic002G029500 Sobic002G029500 Sobic005G097900--Sobic002G029500 Sobic001G415100 Sobic001G415100 Sobic005G097900--Sobic001G415100 Sobic010G242800 Sobic010G242800 Sobic005G097900--Sobic010G242800 Sobic005G182900 Sobic005G182900 Sobic005G097900--Sobic005G182900 Sobic007G064900 Sobic007G064900 Sobic005G097900--Sobic007G064900 Sobic005G097900--Sobic004G299500 Sobic005G197500 Sobic005G197500 Sobic001G271300--Sobic005G197500 Sobic010G268700 Sobic010G268700 Sobic001G271300--Sobic010G268700 Sobic007G111800 Sobic007G111800 Sobic001G271300--Sobic007G111800 Sobic001G271300--Sobic001G415100 Sobic001G271300--Sobic005G097900 Sobic001G271300--Sobic001G293100 Sobic001G271300--Sobic005G060200 Sobic001G271300--Sobic007G212000 Sobic004G009200 Sobic004G009200 Sobic001G271300--Sobic004G009200 Sobic009G060700 Sobic009G060700 Sobic010G152300--Sobic009G060700 Sobic006G092100 Sobic006G092100 Sobic010G152300--Sobic006G092100 Sobic005G134200 Sobic005G134200 Sobic010G152300--Sobic005G134200 Sobic010G213600 Sobic010G213600 Sobic010G152300--Sobic010G213600 Sobic002G391300 Sobic002G391300 Sobic010G152300--Sobic002G391300 Sobic010G152300--Sobic002G029500 Sobic002G289500 Sobic002G289500 Sobic010G152300--Sobic002G289500 Sobic010G191700 Sobic010G191700 Sobic010G152300--Sobic010G191700 Sobic003G441601 Sobic003G441601 Sobic010G152300--Sobic003G441601 Sobic004G261500--Sobic001G395900 Sobic005G101000 Sobic005G101000 Sobic004G261500--Sobic005G101000 Sobic004G261500--Sobic006G230100 Sobic004G261500--Sobic004G299500 Sobic008G058600 Sobic008G058600 Sobic004G261500--Sobic008G058600 Sobic004G261500--Sobic007G202480 Sobic004G261500--Sobic006G230200 Sobic001G153100 Sobic001G153100 Sobic004G261500--Sobic001G153100 Sobic004G261500--Sobic003G154500
Octagon: transcription factors


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