Gene annotation
Transcriptome id Sobic.005G100800.1,Sobic.005G100800.2
Synonym Sb05g008680
Functional annotation initiation factor 2 subunit family domain containing protein, expressed
UniProt A0A1B6PRD6 , A0A1B6PRF6
Pfam PF01008
Panther DB PTHR10233 PTHR10233:SF6
NCBI CDD KOG1468; Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2)
KEGG Orthology K08963; methylthioribose-1-phosphate isomerase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G05830 : NagB/RpiA/CoA transferase-like superfamily protein
RAP-DB (Rice) LOC_Os11g11050.1 : initiation factor 2 subunit family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029669
Brachypodium KQJ88931
Barley HORVU4Hr1G016410.10 , HORVU4Hr1G016410.11 , HORVU4Hr1G016410.6 , HORVU4Hr1G016410.7 , HORVU4Hr1G016410.4 , HORVU4Hr1G016410.5 , HORVU4Hr1G016410.2 , HORVU4Hr1G016410.3 , HORVU4Hr1G016410.1 , HORVU4Hr1G016410.8 , HORVU4Hr1G016410.9
Wheat TraesCS4D02G104900 , TraesCS4A02G204000 , TraesCS4A02G204000 , TraesCS4B02G107800
Populus -


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cDNA sequences
Sobic.005G100800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
2 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
3 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
4 Sobic.008G109400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
5 Sobic.001G271300 expressed protein -
6 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
7 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.006G230200 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
9 Sobic.002G041100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine aminotransferase, putative, expressed K00815: tyrosine aminotransferase
10 Sobic.007G021100 carrier, putative, expressed -
11 Sobic.001G539200 expressed protein -
12 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.001G443100 Oxidoreductase superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.004G299500 - -
15 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
16 Sobic.007G202480 - -
17 Sobic.005G097900 major facilitator superfamily antiporter, putative, expressed -
18 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -
20 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -


Gene co-expression network
sample Sobic005G100800 Sobic005G100800 Sobic007G193200 Sobic007G193200 Sobic005G100800--Sobic007G193200 Sobic005G110541 Sobic005G110541 Sobic005G100800--Sobic005G110541 Sobic004G261500 Sobic004G261500 Sobic005G100800--Sobic004G261500 Sobic008G109400 Sobic008G109400 Sobic005G100800--Sobic008G109400 Sobic001G271300 Sobic001G271300 Sobic005G100800--Sobic001G271300 Sobic001G395900 Sobic001G395900 Sobic005G100800--Sobic001G395900 Sobic003G154500 Sobic003G154500 Sobic005G100800--Sobic003G154500 Sobic006G230200 Sobic006G230200 Sobic005G100800--Sobic006G230200 Sobic002G041100 Sobic002G041100 Sobic005G100800--Sobic002G041100 Sobic007G193200--Sobic004G261500 Sobic004G079900 Sobic004G079900 Sobic007G193200--Sobic004G079900 Sobic001G181600 Sobic001G181600 Sobic007G193200--Sobic001G181600 Sobic007G193200--Sobic003G154500 Sobic001G218400 Sobic001G218400 Sobic007G193200--Sobic001G218400 Sobic005G033000 Sobic005G033000 Sobic007G193200--Sobic005G033000 Sobic001G454900 Sobic001G454900 Sobic007G193200--Sobic001G454900 Sobic005G119900 Sobic005G119900 Sobic007G193200--Sobic005G119900 Sobic003G441800 Sobic003G441800 Sobic007G193200--Sobic003G441800 Sobic005G110541--Sobic005G100800 Sobic005G110541--Sobic007G193200 Sobic001G353200 Sobic001G353200 Sobic005G110541--Sobic001G353200 Sobic010G187500 Sobic010G187500 Sobic005G110541--Sobic010G187500 Sobic005G110541--Sobic004G261500 Sobic001G443100 Sobic001G443100 Sobic005G110541--Sobic001G443100 Sobic007G212000 Sobic007G212000 Sobic005G110541--Sobic007G212000 Sobic001G243100 Sobic001G243100 Sobic005G110541--Sobic001G243100 Sobic004G299500 Sobic004G299500 Sobic005G110541--Sobic004G299500 Sobic004G261500--Sobic001G395900 Sobic005G101000 Sobic005G101000 Sobic004G261500--Sobic005G101000 Sobic006G230100 Sobic006G230100 Sobic004G261500--Sobic006G230100 Sobic004G261500--Sobic004G299500 Sobic008G058600 Sobic008G058600 Sobic004G261500--Sobic008G058600 Sobic007G202480 Sobic007G202480 Sobic004G261500--Sobic007G202480 Sobic004G261500--Sobic006G230200 Sobic001G153100 Sobic001G153100 Sobic004G261500--Sobic001G153100 Sobic004G261500--Sobic003G154500 Sobic008G109400--Sobic001G153100 Sobic001G415100 Sobic001G415100 Sobic008G109400--Sobic001G415100 Sobic002G289500 Sobic002G289500 Sobic008G109400--Sobic002G289500 Sobic008G109400--Sobic006G230200 Sobic008G109400--Sobic001G395900 Sobic008G109400--Sobic007G202480 Sobic008G109400--Sobic004G299500 Sobic009G055300 Sobic009G055300 Sobic008G109400--Sobic009G055300 Sobic002G063700 Sobic002G063700 Sobic008G109400--Sobic002G063700 Sobic005G197500 Sobic005G197500 Sobic001G271300--Sobic005G197500 Sobic010G268700 Sobic010G268700 Sobic001G271300--Sobic010G268700 Sobic007G111800 Sobic007G111800 Sobic001G271300--Sobic007G111800 Sobic001G271300--Sobic001G415100 Sobic005G097900 Sobic005G097900 Sobic001G271300--Sobic005G097900 Sobic001G293100 Sobic001G293100 Sobic001G271300--Sobic001G293100 Sobic005G060200 Sobic005G060200 Sobic001G271300--Sobic005G060200 Sobic001G271300--Sobic007G212000 Sobic004G009200 Sobic004G009200 Sobic001G271300--Sobic004G009200 Sobic001G395900--Sobic007G202480 Sobic001G395900--Sobic004G299500 Sobic001G395900--Sobic005G101000 Sobic001G395900--Sobic006G230100 Sobic001G395900--Sobic006G230200 Sobic001G395900--Sobic008G058600 Sobic006G229901 Sobic006G229901 Sobic001G395900--Sobic006G229901 Sobic001G395900--Sobic004G261500 Sobic005G069166 Sobic005G069166 Sobic001G395900--Sobic005G069166 Sobic003G154500--Sobic001G181600 Sobic003G154500--Sobic005G119900 Sobic003G154500--Sobic001G395900 Sobic003G154500--Sobic006G230200 Sobic003G154500--Sobic007G202480 Sobic003G154500--Sobic009G055300 Sobic003G154500--Sobic006G230100 Sobic003G154500--Sobic001G218400 Sobic003G154500--Sobic004G261500 Sobic006G230200--Sobic009G055300 Sobic006G230200--Sobic001G395900 Sobic006G230200--Sobic006G230100 Sobic006G230200--Sobic007G202480 Sobic006G230200--Sobic004G299500 Sobic005G069332 Sobic005G069332 Sobic006G230200--Sobic005G069332 Sobic008G105800 Sobic008G105800 Sobic006G230200--Sobic008G105800 Sobic006G230200--Sobic001G153100 Sobic006G230200--Sobic005G069166 Sobic002G041100--Sobic001G443100 Sobic002G041100--Sobic006G230100 Sobic002G082000 Sobic002G082000 Sobic002G041100--Sobic002G082000 Sobic002G041100--Sobic001G395900 Sobic002G041100--Sobic004G299500 Sobic002G041100--Sobic005G097900 Sobic002G041100--Sobic007G193200 Sobic007G015000 Sobic007G015000 Sobic002G041100--Sobic007G015000 Sobic002G041100--Sobic001G353200
Octagon: transcription factors


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