Gene annotation
Transcriptome id Sobic.002G041100.1,Sobic.002G041100.2
Synonym Sb02g003520
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tyrosine aminotransferase, putative, expressed
UniProt A0A1B6Q962 , A0A1W0W249
Pfam PF01212 PF00155
Panther DB PTHR11751 PTHR11751:SF400
NCBI CDD -
KEGG Orthology K00815; tyrosine aminotransferase
Gene Ontology GO:0009058; biosynthetic process GO:0016829lyase activity GO:0006520cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT5G36160 : Tyrosine transaminase family protein
RAP-DB (Rice) LOC_Os02g20360.1 : tyrosine aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a031096 , Zm00025a020264 , Zm00025a034312
Brachypodium KQJ94595
Barley HORVU1Hr1G071260.15 , HORVU1Hr1G071260.12 , HORVU1Hr1G071260.13 , HORVU1Hr1G071260.11
Wheat TraesCS1D02G289800 , TraesCS1A02G291200 , TraesCS1D02G289800 , TraesCS1B02G300600
Populus -


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cDNA sequences
Sobic.002G041100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G443100 Oxidoreductase superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.002G082000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
4 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
5 Sobic.004G299500 - -
6 Sobic.005G097900 major facilitator superfamily antiporter, putative, expressed -
7 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
8 Sobic.007G015000 methyltransferase domain containing protein, expressed -
9 Sobic.001G353200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
10 Sobic.002G029500 cytochrome P450 84A1, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
11 Sobic.006G230200 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
12 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -
14 Sobic.001G415100 terpene synthase, putative, expressed -
15 Sobic.007G111800 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
16 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.005G100800 initiation factor 2 subunit family domain containing protein, expressed K08963: methylthioribose-1-phosphate isomerase
18 Sobic.007G202480 - -
19 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
20 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic002G041100 Sobic002G041100 Sobic001G443100 Sobic001G443100 Sobic002G041100--Sobic001G443100 Sobic006G230100 Sobic006G230100 Sobic002G041100--Sobic006G230100 Sobic002G082000 Sobic002G082000 Sobic002G041100--Sobic002G082000 Sobic001G395900 Sobic001G395900 Sobic002G041100--Sobic001G395900 Sobic004G299500 Sobic004G299500 Sobic002G041100--Sobic004G299500 Sobic005G097900 Sobic005G097900 Sobic002G041100--Sobic005G097900 Sobic007G193200 Sobic007G193200 Sobic002G041100--Sobic007G193200 Sobic007G015000 Sobic007G015000 Sobic002G041100--Sobic007G015000 Sobic001G353200 Sobic001G353200 Sobic002G041100--Sobic001G353200 Sobic004G261500 Sobic004G261500 Sobic001G443100--Sobic004G261500 Sobic001G443100--Sobic001G395900 Sobic005G101000 Sobic005G101000 Sobic001G443100--Sobic005G101000 Sobic001G443100--Sobic002G082000 Sobic001G443100--Sobic006G230100 Sobic003G154500 Sobic003G154500 Sobic001G443100--Sobic003G154500 Sobic005G033000 Sobic005G033000 Sobic001G443100--Sobic005G033000 Sobic006G230200 Sobic006G230200 Sobic001G443100--Sobic006G230200 Sobic008G058600 Sobic008G058600 Sobic001G443100--Sobic008G058600 Sobic006G230100--Sobic004G299500 Sobic006G230100--Sobic001G395900 Sobic007G202480 Sobic007G202480 Sobic006G230100--Sobic007G202480 Sobic006G230100--Sobic007G015000 Sobic005G069166 Sobic005G069166 Sobic006G230100--Sobic005G069166 Sobic009G055300 Sobic009G055300 Sobic006G230100--Sobic009G055300 Sobic006G230100--Sobic006G230200 Sobic001G153100 Sobic001G153100 Sobic006G230100--Sobic001G153100 Sobic006G229901 Sobic006G229901 Sobic006G230100--Sobic006G229901 Sobic002G029500 Sobic002G029500 Sobic002G082000--Sobic002G029500 Sobic002G391300 Sobic002G391300 Sobic002G082000--Sobic002G391300 Sobic002G111900 Sobic002G111900 Sobic002G082000--Sobic002G111900 Sobic005G134200 Sobic005G134200 Sobic002G082000--Sobic005G134200 Sobic006G047200 Sobic006G047200 Sobic002G082000--Sobic006G047200 Sobic006G059800 Sobic006G059800 Sobic002G082000--Sobic006G059800 Sobic002G289500 Sobic002G289500 Sobic002G082000--Sobic002G289500 Sobic006G171100 Sobic006G171100 Sobic002G082000--Sobic006G171100 Sobic005G035900 Sobic005G035900 Sobic002G082000--Sobic005G035900 Sobic001G395900--Sobic007G202480 Sobic001G395900--Sobic004G299500 Sobic001G395900--Sobic005G101000 Sobic001G395900--Sobic006G230100 Sobic001G395900--Sobic006G230200 Sobic001G395900--Sobic008G058600 Sobic001G395900--Sobic006G229901 Sobic001G395900--Sobic004G261500 Sobic001G395900--Sobic005G069166 Sobic004G299500--Sobic006G230100 Sobic004G299500--Sobic001G395900 Sobic004G299500--Sobic007G202480 Sobic004G299500--Sobic005G069166 Sobic004G299500--Sobic006G229901 Sobic004G299500--Sobic007G015000 Sobic005G069332 Sobic005G069332 Sobic004G299500--Sobic005G069332 Sobic004G299500--Sobic001G153100 Sobic004G299500--Sobic008G058600 Sobic001G293100 Sobic001G293100 Sobic005G097900--Sobic001G293100 Sobic005G097900--Sobic007G015000 Sobic008G033100 Sobic008G033100 Sobic005G097900--Sobic008G033100 Sobic005G097900--Sobic002G029500 Sobic001G415100 Sobic001G415100 Sobic005G097900--Sobic001G415100 Sobic010G242800 Sobic010G242800 Sobic005G097900--Sobic010G242800 Sobic005G182900 Sobic005G182900 Sobic005G097900--Sobic005G182900 Sobic007G064900 Sobic007G064900 Sobic005G097900--Sobic007G064900 Sobic005G097900--Sobic004G299500 Sobic007G193200--Sobic004G261500 Sobic004G079900 Sobic004G079900 Sobic007G193200--Sobic004G079900 Sobic001G181600 Sobic001G181600 Sobic007G193200--Sobic001G181600 Sobic007G193200--Sobic003G154500 Sobic001G218400 Sobic001G218400 Sobic007G193200--Sobic001G218400 Sobic007G193200--Sobic005G033000 Sobic001G454900 Sobic001G454900 Sobic007G193200--Sobic001G454900 Sobic005G119900 Sobic005G119900 Sobic007G193200--Sobic005G119900 Sobic003G441800 Sobic003G441800 Sobic007G193200--Sobic003G441800 Sobic007G015000--Sobic006G230100 Sobic007G015000--Sobic004G299500 Sobic007G015000--Sobic001G293100 Sobic007G015000--Sobic001G415100 Sobic007G212000 Sobic007G212000 Sobic007G015000--Sobic007G212000 Sobic007G015000--Sobic005G097900 Sobic007G015000--Sobic005G069166 Sobic007G015000--Sobic007G202480 Sobic008G105800 Sobic008G105800 Sobic007G015000--Sobic008G105800 Sobic001G353200--Sobic007G193200 Sobic001G243150 Sobic001G243150 Sobic001G353200--Sobic001G243150 Sobic005G046400 Sobic005G046400 Sobic001G353200--Sobic005G046400 Sobic009G065700 Sobic009G065700 Sobic001G353200--Sobic009G065700 Sobic001G353200--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic001G353200--Sobic010G191600 Sobic009G225800 Sobic009G225800 Sobic001G353200--Sobic009G225800 Sobic001G353200--Sobic003G441800 Sobic001G353200--Sobic002G289500
Octagon: transcription factors


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