Gene annotation
Transcriptome id Sobic.001G353200.1
Synonym Sb01g033790, COPT5
Functional annotation ctr copper transporter family protein, putative, expressed
UniProt C5WYJ3
Pfam PF04145
Panther DB PTHR12483 PTHR12483:SF39
NCBI CDD KOG3386; Copper transporter
KEGG Orthology K14686; SLC31A1, solute carrier family 31 (copper transporter), member 1
Gene Ontology GO:0016021; integral component of membrane GO:0005375copper ion transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT5G20650 : copper transporter 5
RAP-DB (Rice) LOC_Os09g26900.1 : ctr copper transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047149 , Zm00025a013993
Brachypodium PNT64682
Barley HORVU5Hr1G062070.2 , HORVU5Hr1G062070.1 , HORVU5Hr1G062050.4 , HORVU5Hr1G062050.1 , HORVU5Hr1G062050.2 , HORVU5Hr1G062050.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
2 Sobic.001G243150 - -
3 Sobic.005G046400 - -
4 Sobic.009G065700 - -
5 Sobic.002G111900 receptor-like kinase, putative, expressed -
6 Sobic.010G191600 cytochrome P450, putative, expressed -
7 Sobic.009G225800 expressed protein -
8 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
9 Sobic.002G289500 carbohydrate binding protein, putative, expressed -
10 Sobic.006G047200 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
12 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.001G499900 expansin precursor, putative, expressed -
14 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.002G392000 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.003G167300 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
18 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
19 Sobic.005G097400 cell death associated protein, putative, expressed -
20 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic001G353200 Sobic001G353200 Sobic007G193200 Sobic007G193200 Sobic001G353200--Sobic007G193200 Sobic001G243150 Sobic001G243150 Sobic001G353200--Sobic001G243150 Sobic005G046400 Sobic005G046400 Sobic001G353200--Sobic005G046400 Sobic009G065700 Sobic009G065700 Sobic001G353200--Sobic009G065700 Sobic002G111900 Sobic002G111900 Sobic001G353200--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic001G353200--Sobic010G191600 Sobic009G225800 Sobic009G225800 Sobic001G353200--Sobic009G225800 Sobic003G441800 Sobic003G441800 Sobic001G353200--Sobic003G441800 Sobic002G289500 Sobic002G289500 Sobic001G353200--Sobic002G289500 Sobic004G261500 Sobic004G261500 Sobic007G193200--Sobic004G261500 Sobic004G079900 Sobic004G079900 Sobic007G193200--Sobic004G079900 Sobic001G181600 Sobic001G181600 Sobic007G193200--Sobic001G181600 Sobic003G154500 Sobic003G154500 Sobic007G193200--Sobic003G154500 Sobic001G218400 Sobic001G218400 Sobic007G193200--Sobic001G218400 Sobic005G033000 Sobic005G033000 Sobic007G193200--Sobic005G033000 Sobic001G454900 Sobic001G454900 Sobic007G193200--Sobic001G454900 Sobic005G119900 Sobic005G119900 Sobic007G193200--Sobic005G119900 Sobic007G193200--Sobic003G441800 Sobic006G059800 Sobic006G059800 Sobic001G243150--Sobic006G059800 Sobic005G101000 Sobic005G101000 Sobic001G243150--Sobic005G101000 Sobic001G395900 Sobic001G395900 Sobic001G243150--Sobic001G395900 Sobic001G243150--Sobic009G065700 Sobic001G243150--Sobic004G261500 Sobic006G230200 Sobic006G230200 Sobic001G243150--Sobic006G230200 Sobic001G243150--Sobic002G111900 Sobic006G230100 Sobic006G230100 Sobic001G243150--Sobic006G230100 Sobic006G047200 Sobic006G047200 Sobic001G243150--Sobic006G047200 Sobic003G441601 Sobic003G441601 Sobic005G046400--Sobic003G441601 Sobic005G046400--Sobic003G441800 Sobic002G391300 Sobic002G391300 Sobic005G046400--Sobic002G391300 Sobic006G171100 Sobic006G171100 Sobic005G046400--Sobic006G171100 Sobic005G046400--Sobic002G111900 Sobic010G191700 Sobic010G191700 Sobic005G046400--Sobic010G191700 Sobic006G205700 Sobic006G205700 Sobic005G046400--Sobic006G205700 Sobic010G241900 Sobic010G241900 Sobic005G046400--Sobic010G241900 Sobic009G136800 Sobic009G136800 Sobic005G046400--Sobic009G136800 Sobic003G167300 Sobic003G167300 Sobic009G065700--Sobic003G167300 Sobic009G065700--Sobic003G441800 Sobic009G065700--Sobic002G111900 Sobic010G010000 Sobic010G010000 Sobic009G065700--Sobic010G010000 Sobic009G065700--Sobic002G289500 Sobic001G499900 Sobic001G499900 Sobic009G065700--Sobic001G499900 Sobic009G065700--Sobic003G441601 Sobic009G065700--Sobic010G241900 Sobic001G348400 Sobic001G348400 Sobic009G065700--Sobic001G348400 Sobic002G111900--Sobic010G191700 Sobic002G111900--Sobic002G391300 Sobic002G111900--Sobic003G441601 Sobic007G220400 Sobic007G220400 Sobic002G111900--Sobic007G220400 Sobic002G111900--Sobic010G241900 Sobic002G111900--Sobic010G010000 Sobic002G111900--Sobic006G171100 Sobic002G111900--Sobic005G046400 Sobic002G111900--Sobic006G059800 Sobic005G217766 Sobic005G217766 Sobic010G191600--Sobic005G217766 Sobic005G097400 Sobic005G097400 Sobic010G191600--Sobic005G097400 Sobic010G191600--Sobic002G111900 Sobic002G391400 Sobic002G391400 Sobic010G191600--Sobic002G391400 Sobic010G191600--Sobic006G205700 Sobic010G191600--Sobic001G218400 Sobic010G191600--Sobic010G191700 Sobic010G191600--Sobic003G441800 Sobic007G206800 Sobic007G206800 Sobic010G191600--Sobic007G206800 Sobic009G225800--Sobic006G047200 Sobic002G392000 Sobic002G392000 Sobic009G225800--Sobic002G392000 Sobic009G225800--Sobic006G171100 Sobic009G225800--Sobic010G241900 Sobic009G225800--Sobic009G136800 Sobic005G035900 Sobic005G035900 Sobic009G225800--Sobic005G035900 Sobic009G225800--Sobic002G391300 Sobic009G225800--Sobic005G046400 Sobic009G225800--Sobic001G499900 Sobic003G053200 Sobic003G053200 Sobic003G441800--Sobic003G053200 Sobic003G441700 Sobic003G441700 Sobic003G441800--Sobic003G441700 Sobic003G441800--Sobic003G441601 Sobic003G441800--Sobic005G046400 Sobic003G441800--Sobic006G205700 Sobic004G121600 Sobic004G121600 Sobic003G441800--Sobic004G121600 Sobic003G441800--Sobic005G119900 Sobic007G037600 Sobic007G037600 Sobic003G441800--Sobic007G037600 Sobic003G441800--Sobic009G065700 Sobic002G289500--Sobic002G391300 Sobic001G415100 Sobic001G415100 Sobic002G289500--Sobic001G415100 Sobic002G289500--Sobic003G441601 Sobic002G289500--Sobic006G171100 Sobic001G153100 Sobic001G153100 Sobic002G289500--Sobic001G153100 Sobic002G289500--Sobic009G136800 Sobic002G029500 Sobic002G029500 Sobic002G289500--Sobic002G029500 Sobic002G289500--Sobic006G230100 Sobic002G063700 Sobic002G063700 Sobic002G289500--Sobic002G063700
Octagon: transcription factors


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