Gene annotation
Transcriptome id Sobic.008G158900.1
Synonym Sb08g020700
Functional annotation chitinase 2, putative, expressed
UniProt C5YRF7
Pfam PF00704
Panther DB PTHR11177 PTHR11177:SF186
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g28050.1 : chitinase 2, putative, expressed
MaizeGDB (Corn) Zm00025a025298 , Zm00025a029565
Brachypodium KQJ96728
Barley HORVU1Hr1G072250.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G194600 integral membrane protein, putative, expressed -
2 Sobic.006G236600 bHLH family protein, putative, expressed -
3 Sobic.001G538932 - -
4 Sobic.010G155800 proteins of unknown function domain containing protein, expressed -
5 Sobic.005G219700 Leucine Rich Repeat family protein, expressed -
6 Sobic.006G124200 expressed protein -
7 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
8 Sobic.008G055800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.002G222600 aspartic proteinase nepenthesin precursor, putative, expressed -
10 Sobic.003G019400 expressed protein -
11 Sobic.003G395200 AML1, putative, expressed -
12 Sobic.010G134900 DNA binding protein, putative, expressed -
13 Sobic.009G102400 "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
14 Sobic.008G077900 exostosin family domain containing protein, expressed -
15 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
16 Sobic.010G234300 - -
17 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
18 Sobic.002G076700 IPP transferase, putative, expressed K10760: adenylate dimethylallyltransferase (cytokinin synthase)
19 Sobic.003G419400 xylanase inhibitor, putative, expressed -
20 Sobic.006G133400 - -


Gene co-expression network
sample Sobic008G158900 Sobic008G158900 Sobic002G194600 Sobic002G194600 Sobic008G158900--Sobic002G194600 Sobic006G236600 Sobic006G236600 Sobic008G158900--Sobic006G236600 Sobic001G538932 Sobic001G538932 Sobic008G158900--Sobic001G538932 Sobic010G155800 Sobic010G155800 Sobic008G158900--Sobic010G155800 Sobic005G219700 Sobic005G219700 Sobic008G158900--Sobic005G219700 Sobic006G124200 Sobic006G124200 Sobic008G158900--Sobic006G124200 Sobic004G214300 Sobic004G214300 Sobic008G158900--Sobic004G214300 Sobic008G055800 Sobic008G055800 Sobic008G158900--Sobic008G055800 Sobic002G222600 Sobic002G222600 Sobic008G158900--Sobic002G222600 Sobic002G194600--Sobic008G158900 Sobic002G194600--Sobic008G055800 Sobic002G194600--Sobic010G155800 Sobic005G100800 Sobic005G100800 Sobic002G194600--Sobic005G100800 Sobic007G212000 Sobic007G212000 Sobic002G194600--Sobic007G212000 Sobic005G097900 Sobic005G097900 Sobic002G194600--Sobic005G097900 Sobic001G271300 Sobic001G271300 Sobic002G194600--Sobic001G271300 Sobic010G152300 Sobic010G152300 Sobic002G194600--Sobic010G152300 Sobic004G261500 Sobic004G261500 Sobic002G194600--Sobic004G261500 Sobic006G236600--Sobic008G158900 Sobic006G236600--Sobic002G194600 Sobic009G058400 Sobic009G058400 Sobic006G236600--Sobic009G058400 Sobic006G236600--Sobic010G155800 Sobic006G236600--Sobic005G219700 Sobic004G296300 Sobic004G296300 Sobic006G236600--Sobic004G296300 Sobic003G082700 Sobic003G082700 Sobic006G236600--Sobic003G082700 Sobic006G236600--Sobic008G055800 Sobic002G076700 Sobic002G076700 Sobic006G236600--Sobic002G076700 Sobic005G222600 Sobic005G222600 Sobic001G538932--Sobic005G222600 Sobic001G538932--Sobic002G076700 Sobic001G538932--Sobic010G155800 Sobic004G054000 Sobic004G054000 Sobic001G538932--Sobic004G054000 Sobic003G001300 Sobic003G001300 Sobic001G538932--Sobic003G001300 Sobic001G538932--Sobic006G124200 Sobic001G538932--Sobic010G152300 Sobic001G538932--Sobic004G214300 Sobic006G092100 Sobic006G092100 Sobic001G538932--Sobic006G092100 Sobic009G208700 Sobic009G208700 Sobic010G155800--Sobic009G208700 Sobic002G343100 Sobic002G343100 Sobic010G155800--Sobic002G343100 Sobic003G255600 Sobic003G255600 Sobic010G155800--Sobic003G255600 Sobic003G183300 Sobic003G183300 Sobic010G155800--Sobic003G183300 Sobic001G471800 Sobic001G471800 Sobic010G155800--Sobic001G471800 Sobic003G282300 Sobic003G282300 Sobic010G155800--Sobic003G282300 Sobic004G193500 Sobic004G193500 Sobic010G155800--Sobic004G193500 Sobic006G160900 Sobic006G160900 Sobic010G155800--Sobic006G160900 Sobic002G146000 Sobic002G146000 Sobic010G155800--Sobic002G146000 Sobic005G219700--Sobic003G001300 Sobic002G003400 Sobic002G003400 Sobic005G219700--Sobic002G003400 Sobic009G060700 Sobic009G060700 Sobic005G219700--Sobic009G060700 Sobic006G224500 Sobic006G224500 Sobic005G219700--Sobic006G224500 Sobic008G077900 Sobic008G077900 Sobic005G219700--Sobic008G077900 Sobic004G322000 Sobic004G322000 Sobic005G219700--Sobic004G322000 Sobic001G506600 Sobic001G506600 Sobic005G219700--Sobic001G506600 Sobic007G020700 Sobic007G020700 Sobic005G219700--Sobic007G020700 Sobic002G029600 Sobic002G029600 Sobic005G219700--Sobic002G029600 Sobic009G102400 Sobic009G102400 Sobic006G124200--Sobic009G102400 Sobic006G124200--Sobic004G214300 Sobic001G261400 Sobic001G261400 Sobic006G124200--Sobic001G261400 Sobic005G105600 Sobic005G105600 Sobic006G124200--Sobic005G105600 Sobic006G013300 Sobic006G013300 Sobic006G124200--Sobic006G013300 Sobic010G134900 Sobic010G134900 Sobic006G124200--Sobic010G134900 Sobic003G019400 Sobic003G019400 Sobic006G124200--Sobic003G019400 Sobic010G177300 Sobic010G177300 Sobic006G124200--Sobic010G177300 Sobic003G395200 Sobic003G395200 Sobic006G124200--Sobic003G395200 Sobic004G214300--Sobic009G102400 Sobic004G214300--Sobic006G124200 Sobic010G155100 Sobic010G155100 Sobic004G214300--Sobic010G155100 Sobic004G214300--Sobic010G134900 Sobic004G214300--Sobic001G261400 Sobic003G419300 Sobic003G419300 Sobic004G214300--Sobic003G419300 Sobic004G214300--Sobic003G019400 Sobic002G239700 Sobic002G239700 Sobic004G214300--Sobic002G239700 Sobic004G112200 Sobic004G112200 Sobic004G214300--Sobic004G112200 Sobic003G371400 Sobic003G371400 Sobic008G055800--Sobic003G371400 Sobic008G055800--Sobic003G082700 Sobic003G352700 Sobic003G352700 Sobic008G055800--Sobic003G352700 Sobic003G099166 Sobic003G099166 Sobic008G055800--Sobic003G099166 Sobic007G119500 Sobic007G119500 Sobic008G055800--Sobic007G119500 Sobic003G378800 Sobic003G378800 Sobic008G055800--Sobic003G378800 Sobic004G047600 Sobic004G047600 Sobic008G055800--Sobic004G047600 Sobic008G055800--Sobic003G255600 Sobic005G127200 Sobic005G127200 Sobic008G055800--Sobic005G127200 Sobic002G222600--Sobic003G001300 Sobic002G222600--Sobic009G208700 Sobic007G154100 Sobic007G154100 Sobic002G222600--Sobic007G154100 Sobic002G222600--Sobic003G282300 Sobic002G222600--Sobic008G077900 Sobic002G222600--Sobic010G152300 Sobic002G222600--Sobic001G271300 Sobic002G222600--Sobic006G092100 Sobic001G293100 Sobic001G293100 Sobic002G222600--Sobic001G293100
Octagon: transcription factors


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