Gene annotation
Transcriptome id Sobic.001G538932.1
Synonym -
Functional annotation -
UniProt C6JSH0 , A0A109ND58 , A0A1Z5SCD9
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF127
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04460 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g01720.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a000147
Brachypodium -
Barley -
Wheat TraesCS5A02G529500 , TraesCS4D02G354300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G222600 RGH1A, putative, expressed K13457: RPM1, disease resistance protein RPM1
2 Sobic.002G076700 IPP transferase, putative, expressed K10760: adenylate dimethylallyltransferase (cytokinin synthase)
3 Sobic.010G155800 proteins of unknown function domain containing protein, expressed -
4 Sobic.004G054000 expressed protein -
5 Sobic.003G001300 ZOS1-05 - C2H2 zinc finger protein, expressed -
6 Sobic.006G124200 expressed protein -
7 Sobic.010G152300 glycosyltransferase, putative, expressed -
8 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
9 Sobic.006G092100 no apical meristem protein, putative, expressed -
10 Sobic.008G077900 exostosin family domain containing protein, expressed -
11 Sobic.008G158900 chitinase 2, putative, expressed -
12 Sobic.009G102400 "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
13 Sobic.005G009400 expressed protein -
14 Sobic.010G177300 receptor-like protein kinase 2 precursor, putative, expressed -
15 Sobic.009G058400 expressed protein -
16 Sobic.008G058400 amino acid transporter, putative, expressed -
17 Sobic.001G189200 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.009G060700 receptor-like protein kinase 2 precursor, putative, expressed -
19 Sobic.005G057301 - -
20 Sobic.001G293100 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic001G538932 Sobic001G538932 Sobic005G222600 Sobic005G222600 Sobic001G538932--Sobic005G222600 Sobic002G076700 Sobic002G076700 Sobic001G538932--Sobic002G076700 Sobic010G155800 Sobic010G155800 Sobic001G538932--Sobic010G155800 Sobic004G054000 Sobic004G054000 Sobic001G538932--Sobic004G054000 Sobic003G001300 Sobic003G001300 Sobic001G538932--Sobic003G001300 Sobic006G124200 Sobic006G124200 Sobic001G538932--Sobic006G124200 Sobic010G152300 Sobic010G152300 Sobic001G538932--Sobic010G152300 Sobic004G214300 Sobic004G214300 Sobic001G538932--Sobic004G214300 Sobic006G092100 Sobic006G092100 Sobic001G538932--Sobic006G092100 Sobic009G060700 Sobic009G060700 Sobic005G222600--Sobic009G060700 Sobic005G222600--Sobic003G001300 Sobic008G077900 Sobic008G077900 Sobic005G222600--Sobic008G077900 Sobic008G138700 Sobic008G138700 Sobic005G222600--Sobic008G138700 Sobic005G071700 Sobic005G071700 Sobic005G222600--Sobic005G071700 Sobic010G213600 Sobic010G213600 Sobic005G222600--Sobic010G213600 Sobic005G222600--Sobic010G152300 Sobic005G222600--Sobic006G092100 Sobic009G058400 Sobic009G058400 Sobic005G222600--Sobic009G058400 Sobic002G076700--Sobic010G152300 Sobic002G076700--Sobic009G060700 Sobic002G076700--Sobic005G222600 Sobic002G076700--Sobic009G058400 Sobic002G076700--Sobic006G092100 Sobic001G232000 Sobic001G232000 Sobic002G076700--Sobic001G232000 Sobic002G076700--Sobic003G001300 Sobic005G134200 Sobic005G134200 Sobic002G076700--Sobic005G134200 Sobic001G521600 Sobic001G521600 Sobic002G076700--Sobic001G521600 Sobic009G208700 Sobic009G208700 Sobic010G155800--Sobic009G208700 Sobic002G343100 Sobic002G343100 Sobic010G155800--Sobic002G343100 Sobic003G255600 Sobic003G255600 Sobic010G155800--Sobic003G255600 Sobic003G183300 Sobic003G183300 Sobic010G155800--Sobic003G183300 Sobic001G471800 Sobic001G471800 Sobic010G155800--Sobic001G471800 Sobic003G282300 Sobic003G282300 Sobic010G155800--Sobic003G282300 Sobic004G193500 Sobic004G193500 Sobic010G155800--Sobic004G193500 Sobic006G160900 Sobic006G160900 Sobic010G155800--Sobic006G160900 Sobic002G146000 Sobic002G146000 Sobic010G155800--Sobic002G146000 Sobic008G168100 Sobic008G168100 Sobic004G054000--Sobic008G168100 Sobic009G250100 Sobic009G250100 Sobic004G054000--Sobic009G250100 Sobic009G059500 Sobic009G059500 Sobic004G054000--Sobic009G059500 Sobic003G324600 Sobic003G324600 Sobic004G054000--Sobic003G324600 Sobic008G143000 Sobic008G143000 Sobic004G054000--Sobic008G143000 Sobic006G201000 Sobic006G201000 Sobic004G054000--Sobic006G201000 Sobic004G054000--Sobic001G538932 Sobic007G113300 Sobic007G113300 Sobic004G054000--Sobic007G113300 Sobic004G054000--Sobic010G155800 Sobic003G001300--Sobic008G077900 Sobic003G001300--Sobic009G060700 Sobic003G001300--Sobic005G222600 Sobic010G152500 Sobic010G152500 Sobic003G001300--Sobic010G152500 Sobic003G001300--Sobic008G138700 Sobic003G001300--Sobic006G092100 Sobic007G154100 Sobic007G154100 Sobic003G001300--Sobic007G154100 Sobic004G322000 Sobic004G322000 Sobic003G001300--Sobic004G322000 Sobic003G001300--Sobic010G152300 Sobic009G102400 Sobic009G102400 Sobic006G124200--Sobic009G102400 Sobic006G124200--Sobic004G214300 Sobic001G261400 Sobic001G261400 Sobic006G124200--Sobic001G261400 Sobic005G105600 Sobic005G105600 Sobic006G124200--Sobic005G105600 Sobic006G013300 Sobic006G013300 Sobic006G124200--Sobic006G013300 Sobic010G134900 Sobic010G134900 Sobic006G124200--Sobic010G134900 Sobic003G019400 Sobic003G019400 Sobic006G124200--Sobic003G019400 Sobic010G177300 Sobic010G177300 Sobic006G124200--Sobic010G177300 Sobic003G395200 Sobic003G395200 Sobic006G124200--Sobic003G395200 Sobic010G152300--Sobic009G060700 Sobic010G152300--Sobic006G092100 Sobic010G152300--Sobic005G134200 Sobic010G152300--Sobic010G213600 Sobic002G391300 Sobic002G391300 Sobic010G152300--Sobic002G391300 Sobic002G029500 Sobic002G029500 Sobic010G152300--Sobic002G029500 Sobic002G289500 Sobic002G289500 Sobic010G152300--Sobic002G289500 Sobic010G191700 Sobic010G191700 Sobic010G152300--Sobic010G191700 Sobic003G441601 Sobic003G441601 Sobic010G152300--Sobic003G441601 Sobic004G214300--Sobic009G102400 Sobic004G214300--Sobic006G124200 Sobic010G155100 Sobic010G155100 Sobic004G214300--Sobic010G155100 Sobic004G214300--Sobic010G134900 Sobic004G214300--Sobic001G261400 Sobic003G419300 Sobic003G419300 Sobic004G214300--Sobic003G419300 Sobic004G214300--Sobic003G019400 Sobic002G239700 Sobic002G239700 Sobic004G214300--Sobic002G239700 Sobic004G112200 Sobic004G112200 Sobic004G214300--Sobic004G112200 Sobic006G092100--Sobic010G213600 Sobic006G092100--Sobic010G152300 Sobic001G293100 Sobic001G293100 Sobic006G092100--Sobic001G293100 Sobic008G033100 Sobic008G033100 Sobic006G092100--Sobic008G033100 Sobic006G092100--Sobic008G138700 Sobic005G097900 Sobic005G097900 Sobic006G092100--Sobic005G097900 Sobic005G182900 Sobic005G182900 Sobic006G092100--Sobic005G182900 Sobic006G092100--Sobic002G029500 Sobic002G019000 Sobic002G019000 Sobic006G092100--Sobic002G019000
Octagon: transcription factors


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