Gene annotation
Transcriptome id Sobic.005G093500.1,Sobic.005G093500.2,Sobic.005G093500.3
Synonym
Functional annotation expressed protein
UniProt A0A1B6PR78 , A0A1Z5RHJ0
Pfam PF02902
Panther DB PTHR12606 PTHR12606:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT3G06910 : UB-like protease 1A
RAP-DB (Rice) LOC_Os06g13750.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G041150 - -
2 Sobic.005G071800 - -
3 Sobic.003G371400 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
4 Sobic.004G085500 OsFBK3 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.005G012800 expressed protein -
6 Sobic.007G064900 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
7 Sobic.006G256200 Myb-like DNA-binding domain containing protein, putative, expressed -
8 Sobic.004G052401 - -
9 Sobic.002G083600 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
10 Sobic.001G443100 Oxidoreductase superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
12 Sobic.001G343400 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
13 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
14 Sobic.003G258800 glutamate synthase, chloroplast precursor, putative, expressed K00264: glutamate synthase (NADH)
15 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
16 Sobic.002G082000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
17 Sobic.010G234300 - -
18 Sobic.009G106500 PMR5, putative, expressed -
19 Sobic.002G194600 integral membrane protein, putative, expressed -
20 Sobic.008G055800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic005G093500 Sobic005G093500 Sobic002G041150 Sobic002G041150 Sobic005G093500--Sobic002G041150 Sobic005G071800 Sobic005G071800 Sobic005G093500--Sobic005G071800 Sobic003G371400 Sobic003G371400 Sobic005G093500--Sobic003G371400 Sobic004G085500 Sobic004G085500 Sobic005G093500--Sobic004G085500 Sobic005G012800 Sobic005G012800 Sobic005G093500--Sobic005G012800 Sobic007G064900 Sobic007G064900 Sobic005G093500--Sobic007G064900 Sobic006G256200 Sobic006G256200 Sobic005G093500--Sobic006G256200 Sobic004G052401 Sobic004G052401 Sobic005G093500--Sobic004G052401 Sobic002G083600 Sobic002G083600 Sobic005G093500--Sobic002G083600 Sobic002G041150--Sobic005G093500 Sobic001G343400 Sobic001G343400 Sobic002G041150--Sobic001G343400 Sobic001G140300 Sobic001G140300 Sobic002G041150--Sobic001G140300 Sobic001G358700 Sobic001G358700 Sobic002G041150--Sobic001G358700 Sobic002G041150--Sobic004G052401 Sobic002G041150--Sobic003G371400 Sobic003G239100 Sobic003G239100 Sobic002G041150--Sobic003G239100 Sobic003G234101 Sobic003G234101 Sobic002G041150--Sobic003G234101 Sobic003G082700 Sobic003G082700 Sobic002G041150--Sobic003G082700 Sobic005G071800--Sobic005G012800 Sobic005G071800--Sobic005G093500 Sobic009G063400 Sobic009G063400 Sobic005G071800--Sobic009G063400 Sobic001G196000 Sobic001G196000 Sobic005G071800--Sobic001G196000 Sobic005G071800--Sobic006G256200 Sobic010G096100 Sobic010G096100 Sobic005G071800--Sobic010G096100 Sobic002G064600 Sobic002G064600 Sobic005G071800--Sobic002G064600 Sobic003G258800 Sobic003G258800 Sobic005G071800--Sobic003G258800 Sobic005G071800--Sobic002G083600 Sobic005G112000 Sobic005G112000 Sobic003G371400--Sobic005G112000 Sobic003G371400--Sobic001G343400 Sobic008G055800 Sobic008G055800 Sobic003G371400--Sobic008G055800 Sobic009G221900 Sobic009G221900 Sobic003G371400--Sobic009G221900 Sobic003G371400--Sobic003G082700 Sobic001G208600 Sobic001G208600 Sobic003G371400--Sobic001G208600 Sobic003G378800 Sobic003G378800 Sobic003G371400--Sobic003G378800 Sobic003G099166 Sobic003G099166 Sobic003G371400--Sobic003G099166 Sobic003G371400--Sobic002G083600 Sobic006G101900 Sobic006G101900 Sobic004G085500--Sobic006G101900 Sobic009G225800 Sobic009G225800 Sobic004G085500--Sobic009G225800 Sobic010G001300 Sobic010G001300 Sobic004G085500--Sobic010G001300 Sobic009G084400 Sobic009G084400 Sobic004G085500--Sobic009G084400 Sobic005G134200 Sobic005G134200 Sobic004G085500--Sobic005G134200 Sobic004G085500--Sobic005G093500 Sobic004G187600 Sobic004G187600 Sobic004G085500--Sobic004G187600 Sobic009G106500 Sobic009G106500 Sobic004G085500--Sobic009G106500 Sobic004G008600 Sobic004G008600 Sobic004G085500--Sobic004G008600 Sobic005G012800--Sobic005G071800 Sobic002G145300 Sobic002G145300 Sobic005G012800--Sobic002G145300 Sobic005G012800--Sobic002G083600 Sobic001G073150 Sobic001G073150 Sobic005G012800--Sobic001G073150 Sobic005G012800--Sobic005G093500 Sobic004G296300 Sobic004G296300 Sobic005G012800--Sobic004G296300 Sobic009G251100 Sobic009G251100 Sobic005G012800--Sobic009G251100 Sobic001G029800 Sobic001G029800 Sobic005G012800--Sobic001G029800 Sobic001G368100 Sobic001G368100 Sobic005G012800--Sobic001G368100 Sobic002G029500 Sobic002G029500 Sobic007G064900--Sobic002G029500 Sobic010G242800 Sobic010G242800 Sobic007G064900--Sobic010G242800 Sobic008G033100 Sobic008G033100 Sobic007G064900--Sobic008G033100 Sobic005G097900 Sobic005G097900 Sobic007G064900--Sobic005G097900 Sobic005G182900 Sobic005G182900 Sobic007G064900--Sobic005G182900 Sobic005G110511 Sobic005G110511 Sobic007G064900--Sobic005G110511 Sobic002G019000 Sobic002G019000 Sobic007G064900--Sobic002G019000 Sobic001G415100 Sobic001G415100 Sobic007G064900--Sobic001G415100 Sobic005G065700 Sobic005G065700 Sobic007G064900--Sobic005G065700 Sobic008G072600 Sobic008G072600 Sobic006G256200--Sobic008G072600 Sobic006G256200--Sobic009G221900 Sobic008G091557 Sobic008G091557 Sobic006G256200--Sobic008G091557 Sobic009G017500 Sobic009G017500 Sobic006G256200--Sobic009G017500 Sobic006G249400 Sobic006G249400 Sobic006G256200--Sobic006G249400 Sobic006G256200--Sobic002G083600 Sobic006G256200--Sobic001G208600 Sobic006G256200--Sobic005G071800 Sobic005G115600 Sobic005G115600 Sobic006G256200--Sobic005G115600 Sobic010G052300 Sobic010G052300 Sobic004G052401--Sobic010G052300 Sobic010G171300 Sobic010G171300 Sobic004G052401--Sobic010G171300 Sobic009G200400 Sobic009G200400 Sobic004G052401--Sobic009G200400 Sobic004G052401--Sobic005G093500 Sobic004G052401--Sobic002G041150 Sobic004G052401--Sobic003G234101 Sobic004G052401--Sobic001G343400 Sobic003G435100 Sobic003G435100 Sobic004G052401--Sobic003G435100 Sobic004G052401--Sobic006G256200 Sobic002G083600--Sobic003G371400 Sobic002G083600--Sobic005G112000 Sobic002G083600--Sobic009G221900 Sobic001G402400 Sobic001G402400 Sobic002G083600--Sobic001G402400 Sobic002G083600--Sobic007G064900 Sobic002G207000 Sobic002G207000 Sobic002G083600--Sobic002G207000 Sobic010G234300 Sobic010G234300 Sobic002G083600--Sobic010G234300 Sobic002G083600--Sobic005G012800 Sobic001G365200 Sobic001G365200 Sobic002G083600--Sobic001G365200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.