Gene annotation
Transcriptome id Sobic.001G343400.4,Sobic.001G343400.2,Sobic.001G343400.6,Sobic.001G343400.5,Sobic.001G343400.3,Sobic.001G343400.1
Synonym 3BETAHSD/D1, Sb01g032970, AT3BETAHSD/D1
Functional annotation 3-beta-hydroxy-delta5-steroid dehydrogenase (At) (PubMedID : 27208977)
sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
UniProt A0A1Z5S942 , A0A1Z5S915 , A0A1Z5S926 , A0A1B6QMN0 , A0A1Z5S940
Pfam PF01370
Panther DB PTHR10366 PTHR10366:SF471 PTHR10366 PTHR10366:SF242
NCBI CDD KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
KEGG Orthology K07748; NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G47290 : 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1
RAP-DB (Rice) LOC_Os03g29150.1,LOC_Os03g29170.1 : sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed,NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002788
Brachypodium -
Barley HORVU7Hr1G118180.4 , HORVU7Hr1G118180.5 , HORVU7Hr1G118180.2 , HORVU7Hr1G118180.3 , HORVU7Hr1G118180.1
Wheat TraesCS7A02G538700 , TraesCS7A02G538700 , TraesCSU02G232300 , TraesCS7B02G459300 , TraesCS7B02G459300 , TraesCS5D02G006300 , TraesCS7B02G459300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G371400 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
2 Sobic.003G234101 - -
3 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
4 Sobic.001G140300 glycosyl hydrolase family 10 protein, putative, expressed -
5 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
6 Sobic.005G145100 phospholipase A2, putative, expressed -
7 Sobic.001G388000 GTPase-activating protein, putative, expressed -
8 Sobic.002G041150 - -
9 Sobic.008G055800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.001G358700 heavy metal-associated domain containing protein, expressed -
11 Sobic.010G052300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBL28 - F-box domain and LRR containing protein, expressed -
12 Sobic.003G435100 expressed protein -
13 Sobic.001G208600 receptor kinase like protein, putative, expressed -
14 Sobic.001G334900 X8 domain containing protein, expressed -
15 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
16 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
17 Sobic.010G171300 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
18 Sobic.006G249400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
19 Sobic.005G093500 expressed protein -
20 Sobic.003G099166 - -


Gene co-expression network
sample Sobic001G343400 Sobic001G343400 Sobic003G371400 Sobic003G371400 Sobic001G343400--Sobic003G371400 Sobic003G234101 Sobic003G234101 Sobic001G343400--Sobic003G234101 Sobic004G290300 Sobic004G290300 Sobic001G343400--Sobic004G290300 Sobic001G140300 Sobic001G140300 Sobic001G343400--Sobic001G140300 Sobic005G112000 Sobic005G112000 Sobic001G343400--Sobic005G112000 Sobic005G145100 Sobic005G145100 Sobic001G343400--Sobic005G145100 Sobic001G388000 Sobic001G388000 Sobic001G343400--Sobic001G388000 Sobic002G041150 Sobic002G041150 Sobic001G343400--Sobic002G041150 Sobic008G055800 Sobic008G055800 Sobic001G343400--Sobic008G055800 Sobic003G371400--Sobic005G112000 Sobic003G371400--Sobic001G343400 Sobic003G371400--Sobic008G055800 Sobic009G221900 Sobic009G221900 Sobic003G371400--Sobic009G221900 Sobic003G082700 Sobic003G082700 Sobic003G371400--Sobic003G082700 Sobic001G208600 Sobic001G208600 Sobic003G371400--Sobic001G208600 Sobic003G378800 Sobic003G378800 Sobic003G371400--Sobic003G378800 Sobic003G099166 Sobic003G099166 Sobic003G371400--Sobic003G099166 Sobic002G083600 Sobic002G083600 Sobic003G371400--Sobic002G083600 Sobic007G075700 Sobic007G075700 Sobic003G234101--Sobic007G075700 Sobic010G052300 Sobic010G052300 Sobic003G234101--Sobic010G052300 Sobic010G240700 Sobic010G240700 Sobic003G234101--Sobic010G240700 Sobic003G234101--Sobic001G343400 Sobic010G171300 Sobic010G171300 Sobic003G234101--Sobic010G171300 Sobic010G240500 Sobic010G240500 Sobic003G234101--Sobic010G240500 Sobic003G435100 Sobic003G435100 Sobic003G234101--Sobic003G435100 Sobic006G249400 Sobic006G249400 Sobic003G234101--Sobic006G249400 Sobic010G240600 Sobic010G240600 Sobic003G234101--Sobic010G240600 Sobic004G290300--Sobic005G145100 Sobic001G129600 Sobic001G129600 Sobic004G290300--Sobic001G129600 Sobic002G028500 Sobic002G028500 Sobic004G290300--Sobic002G028500 Sobic001G140800 Sobic001G140800 Sobic004G290300--Sobic001G140800 Sobic004G290300--Sobic001G388000 Sobic004G290300--Sobic001G208600 Sobic004G266700 Sobic004G266700 Sobic004G290300--Sobic004G266700 Sobic004G290300--Sobic001G343400 Sobic004G290300--Sobic005G112000 Sobic001G140300--Sobic001G343400 Sobic001G140300--Sobic005G112000 Sobic001G140300--Sobic003G082700 Sobic003G239100 Sobic003G239100 Sobic001G140300--Sobic003G239100 Sobic001G140300--Sobic004G290300 Sobic001G140300--Sobic003G371400 Sobic001G358700 Sobic001G358700 Sobic001G140300--Sobic001G358700 Sobic001G140300--Sobic005G145100 Sobic004G116800 Sobic004G116800 Sobic001G140300--Sobic004G116800 Sobic005G112000--Sobic003G371400 Sobic005G112000--Sobic003G082700 Sobic005G112000--Sobic001G388000 Sobic010G133932 Sobic010G133932 Sobic005G112000--Sobic010G133932 Sobic003G270400 Sobic003G270400 Sobic005G112000--Sobic003G270400 Sobic003G366300 Sobic003G366300 Sobic005G112000--Sobic003G366300 Sobic005G112000--Sobic001G208600 Sobic010G007000 Sobic010G007000 Sobic005G112000--Sobic010G007000 Sobic006G160900 Sobic006G160900 Sobic005G112000--Sobic006G160900 Sobic005G145100--Sobic002G028500 Sobic005G145100--Sobic001G208600 Sobic005G145100--Sobic003G239100 Sobic005G145100--Sobic004G290300 Sobic005G145100--Sobic001G129600 Sobic005G145100--Sobic004G266700 Sobic005G145100--Sobic001G140800 Sobic005G145100--Sobic001G388000 Sobic001G144800 Sobic001G144800 Sobic005G145100--Sobic001G144800 Sobic001G388000--Sobic010G133932 Sobic001G388000--Sobic001G140800 Sobic001G388000--Sobic005G145100 Sobic001G388000--Sobic005G112000 Sobic001G388000--Sobic003G366300 Sobic005G110600 Sobic005G110600 Sobic001G388000--Sobic005G110600 Sobic001G388000--Sobic004G290300 Sobic001G388000--Sobic003G239100 Sobic001G484000 Sobic001G484000 Sobic001G388000--Sobic001G484000 Sobic005G093500 Sobic005G093500 Sobic002G041150--Sobic005G093500 Sobic002G041150--Sobic001G343400 Sobic002G041150--Sobic001G140300 Sobic002G041150--Sobic001G358700 Sobic004G052401 Sobic004G052401 Sobic002G041150--Sobic004G052401 Sobic002G041150--Sobic003G371400 Sobic002G041150--Sobic003G239100 Sobic002G041150--Sobic003G234101 Sobic002G041150--Sobic003G082700 Sobic008G055800--Sobic003G371400 Sobic008G055800--Sobic003G082700 Sobic003G352700 Sobic003G352700 Sobic008G055800--Sobic003G352700 Sobic008G055800--Sobic003G099166 Sobic007G119500 Sobic007G119500 Sobic008G055800--Sobic007G119500 Sobic008G055800--Sobic003G378800 Sobic004G047600 Sobic004G047600 Sobic008G055800--Sobic004G047600 Sobic003G255600 Sobic003G255600 Sobic008G055800--Sobic003G255600 Sobic005G127200 Sobic005G127200 Sobic008G055800--Sobic005G127200
Octagon: transcription factors


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